introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
7 rows where transcript_id = 11132755
This data as json, CSV (advanced)
Suggested facets: score, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
61608302 | GT-AG | 0 | 3.3714422873613245e-05 | 4972 | rna-XM_027342262.1 11132755 | 1 | 1742730 | 1747701 | Dermatophagoides pteronyssinus 6956 | AAG|GTATGATGAA...ATGTTCTGGATT/TTTTGTTTCATT...TTCAG|CCA | 0 | 1 | 2.149 |
61608303 | GT-AG | 0 | 1.000000099473604e-05 | 184 | rna-XM_027342262.1 11132755 | 2 | 1747825 | 1748008 | Dermatophagoides pteronyssinus 6956 | CAG|GTATGAATAG...AATTATTTATTC/TAATTATTTATT...CCTAG|TTG | 0 | 1 | 4.352 |
61608304 | GT-AG | 0 | 1.000000099473604e-05 | 1129 | rna-XM_027342262.1 11132755 | 3 | 1749005 | 1750133 | Dermatophagoides pteronyssinus 6956 | ATG|GTTAGTATTT...TCTTTTTTAATT/TCTTTTTTAATT...AATAG|GTT | 0 | 1 | 22.192 |
61608305 | GT-AG | 0 | 9.251810117748136e-05 | 63 | rna-XM_027342262.1 11132755 | 4 | 1752424 | 1752486 | Dermatophagoides pteronyssinus 6956 | AAG|GTAGTTTTTT...ATTGTATTGATC/ATTGTATTGATC...TATAG|AAA | 1 | 1 | 63.21 |
61608306 | GT-AG | 0 | 0.0005814973915175 | 77 | rna-XM_027342262.1 11132755 | 5 | 1752589 | 1752665 | Dermatophagoides pteronyssinus 6956 | GTT|GTAAGCTACA...TTTTTTTTCATT/TTTTTTTTCATT...CATAG|GGA | 1 | 1 | 65.037 |
61608307 | GT-AG | 0 | 1.000000099473604e-05 | 50 | rna-XM_027342262.1 11132755 | 6 | 1753107 | 1753156 | Dermatophagoides pteronyssinus 6956 | CAG|GTAAACCGAT...CAGTTTTTGCCA/AATAATCTAATT...TATAG|TTT | 1 | 1 | 72.936 |
61608308 | GT-AG | 0 | 0.00085851071423 | 58 | rna-XM_027342262.1 11132755 | 7 | 1753974 | 1754031 | Dermatophagoides pteronyssinus 6956 | TAG|GTCTGTTTTA...ATTTCATTAACT/TTTTATTTCATT...TACAG|GCC | 2 | 1 | 87.569 |
Advanced export
JSON shape: default, array, newline-delimited, object
CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);