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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

14 rows where transcript_id = 11132753

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Suggested facets: score, length, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
61608280 GT-AG 0 1.000000099473604e-05 2196 rna-XM_027349756.1 11132753 1 3172007 3174202 Dermatophagoides pteronyssinus 6956 TTG|GTAAGAATAA...TTTTTCTTATAT/ATTTTTCTTATA...AATAG|CTC 1 1 0.641
61608281 GT-AG 0 1.000000099473604e-05 65 rna-XM_027349756.1 11132753 2 3171771 3171835 Dermatophagoides pteronyssinus 6956 AAG|GTAAATTAAA...GTTATATTGAAA/TCGGAATTGATT...ATTAG|GAA 1 1 3.604
61608282 GT-AG 0 1.000000099473604e-05 10205 rna-XM_027349756.1 11132753 3 3161344 3171548 Dermatophagoides pteronyssinus 6956 CTA|GTAAGTGATA...ATTCATTTAAAA/TTCCAATTTATT...AATAG|GCG 1 1 7.45
61608283 GT-AG 0 0.0001846665690339 69 rna-XM_027349756.1 11132753 4 3161213 3161281 Dermatophagoides pteronyssinus 6956 GGC|GTAAGTATTT...TTGTTGTTGATA/TTGTTGTTGATA...TTTAG|ATT 0 1 8.524
61608284 GT-AG 0 0.0002140562566924 945 rna-XM_027349756.1 11132753 5 3160159 3161103 Dermatophagoides pteronyssinus 6956 AGG|GTAAGTTTGT...GTTTTCTTGATC/GTTTTCTTGATC...TTTAG|GTG 1 1 10.412
61608285 GT-AG 0 0.0006448952906119 53 rna-XM_027349756.1 11132753 6 3159833 3159885 Dermatophagoides pteronyssinus 6956 CAG|GTATGATTTG...TCTATTTTAAAA/TCTATTTTAAAA...TAAAG|AAC 1 1 15.142
61608286 GT-AG 0 0.0010185239215212 52 rna-XM_027349756.1 11132753 7 3159041 3159092 Dermatophagoides pteronyssinus 6956 TTT|GTAAGTATTT...TAACTTTTAATT/TAACTTTTAATT...GCCAG|CAA 0 1 27.963
61608287 GT-AG 0 1.000000099473604e-05 50 rna-XM_027349756.1 11132753 8 3158695 3158744 Dermatophagoides pteronyssinus 6956 CAT|GTAAGTCGGA...CAGATTTCAATA/TCAGATTTCAAT...TCTAG|ATA 2 1 33.091
61608288 GT-AG 0 1.000000099473604e-05 59 rna-XM_027349756.1 11132753 9 3157974 3158032 Dermatophagoides pteronyssinus 6956 ACG|GTAAGGACAT...TTACTTTTGATA/ATTTGACTAATA...CCCAG|TGC 1 1 44.56
61608289 GT-AG 0 1.4714821872420182e-05 54 rna-XM_027349756.1 11132753 10 3157560 3157613 Dermatophagoides pteronyssinus 6956 ACG|GTAAGATTTG...TTCTCATTAACC/AAAGTTCTCATT...CACAG|TGC 1 1 50.797
61608290 GT-AG 0 1.9224377155565497e-05 56 rna-XM_027349756.1 11132753 11 3157141 3157196 Dermatophagoides pteronyssinus 6956 AAG|GTAATTTTGA...CAATCATTGAAT/TTCTGTTTCAAT...TCCAG|AAC 1 1 57.086
61608291 GT-AG 0 1.000000099473604e-05 59 rna-XM_027349756.1 11132753 12 3156686 3156744 Dermatophagoides pteronyssinus 6956 AAG|GTTAGGATAC...ACTGTTTAAATT/CACTGTTTAAAT...TCTAG|CGC 1 1 63.947
61608292 GT-AG 0 1.000000099473604e-05 50 rna-XM_027349756.1 11132753 13 3156365 3156414 Dermatophagoides pteronyssinus 6956 TAG|GTTCGAATTC...TAAACCTAAAAC/CTAAAACTTATG...TATAG|AAT 2 1 68.642
61608293 GT-AG 0 1.000000099473604e-05 45 rna-XM_027349756.1 11132753 14 3155940 3155984 Dermatophagoides pteronyssinus 6956 CTG|GTAAGATTTG...GGATTATTAACA/GGATTATTAACA...TTCAG|TAC 1 1 75.225

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 27.073ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)