introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
14 rows where transcript_id = 11132753
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Suggested facets: score, length, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
61608280 | GT-AG | 0 | 1.000000099473604e-05 | 2196 | rna-XM_027349756.1 11132753 | 1 | 3172007 | 3174202 | Dermatophagoides pteronyssinus 6956 | TTG|GTAAGAATAA...TTTTTCTTATAT/ATTTTTCTTATA...AATAG|CTC | 1 | 1 | 0.641 |
61608281 | GT-AG | 0 | 1.000000099473604e-05 | 65 | rna-XM_027349756.1 11132753 | 2 | 3171771 | 3171835 | Dermatophagoides pteronyssinus 6956 | AAG|GTAAATTAAA...GTTATATTGAAA/TCGGAATTGATT...ATTAG|GAA | 1 | 1 | 3.604 |
61608282 | GT-AG | 0 | 1.000000099473604e-05 | 10205 | rna-XM_027349756.1 11132753 | 3 | 3161344 | 3171548 | Dermatophagoides pteronyssinus 6956 | CTA|GTAAGTGATA...ATTCATTTAAAA/TTCCAATTTATT...AATAG|GCG | 1 | 1 | 7.45 |
61608283 | GT-AG | 0 | 0.0001846665690339 | 69 | rna-XM_027349756.1 11132753 | 4 | 3161213 | 3161281 | Dermatophagoides pteronyssinus 6956 | GGC|GTAAGTATTT...TTGTTGTTGATA/TTGTTGTTGATA...TTTAG|ATT | 0 | 1 | 8.524 |
61608284 | GT-AG | 0 | 0.0002140562566924 | 945 | rna-XM_027349756.1 11132753 | 5 | 3160159 | 3161103 | Dermatophagoides pteronyssinus 6956 | AGG|GTAAGTTTGT...GTTTTCTTGATC/GTTTTCTTGATC...TTTAG|GTG | 1 | 1 | 10.412 |
61608285 | GT-AG | 0 | 0.0006448952906119 | 53 | rna-XM_027349756.1 11132753 | 6 | 3159833 | 3159885 | Dermatophagoides pteronyssinus 6956 | CAG|GTATGATTTG...TCTATTTTAAAA/TCTATTTTAAAA...TAAAG|AAC | 1 | 1 | 15.142 |
61608286 | GT-AG | 0 | 0.0010185239215212 | 52 | rna-XM_027349756.1 11132753 | 7 | 3159041 | 3159092 | Dermatophagoides pteronyssinus 6956 | TTT|GTAAGTATTT...TAACTTTTAATT/TAACTTTTAATT...GCCAG|CAA | 0 | 1 | 27.963 |
61608287 | GT-AG | 0 | 1.000000099473604e-05 | 50 | rna-XM_027349756.1 11132753 | 8 | 3158695 | 3158744 | Dermatophagoides pteronyssinus 6956 | CAT|GTAAGTCGGA...CAGATTTCAATA/TCAGATTTCAAT...TCTAG|ATA | 2 | 1 | 33.091 |
61608288 | GT-AG | 0 | 1.000000099473604e-05 | 59 | rna-XM_027349756.1 11132753 | 9 | 3157974 | 3158032 | Dermatophagoides pteronyssinus 6956 | ACG|GTAAGGACAT...TTACTTTTGATA/ATTTGACTAATA...CCCAG|TGC | 1 | 1 | 44.56 |
61608289 | GT-AG | 0 | 1.4714821872420182e-05 | 54 | rna-XM_027349756.1 11132753 | 10 | 3157560 | 3157613 | Dermatophagoides pteronyssinus 6956 | ACG|GTAAGATTTG...TTCTCATTAACC/AAAGTTCTCATT...CACAG|TGC | 1 | 1 | 50.797 |
61608290 | GT-AG | 0 | 1.9224377155565497e-05 | 56 | rna-XM_027349756.1 11132753 | 11 | 3157141 | 3157196 | Dermatophagoides pteronyssinus 6956 | AAG|GTAATTTTGA...CAATCATTGAAT/TTCTGTTTCAAT...TCCAG|AAC | 1 | 1 | 57.086 |
61608291 | GT-AG | 0 | 1.000000099473604e-05 | 59 | rna-XM_027349756.1 11132753 | 12 | 3156686 | 3156744 | Dermatophagoides pteronyssinus 6956 | AAG|GTTAGGATAC...ACTGTTTAAATT/CACTGTTTAAAT...TCTAG|CGC | 1 | 1 | 63.947 |
61608292 | GT-AG | 0 | 1.000000099473604e-05 | 50 | rna-XM_027349756.1 11132753 | 13 | 3156365 | 3156414 | Dermatophagoides pteronyssinus 6956 | TAG|GTTCGAATTC...TAAACCTAAAAC/CTAAAACTTATG...TATAG|AAT | 2 | 1 | 68.642 |
61608293 | GT-AG | 0 | 1.000000099473604e-05 | 45 | rna-XM_027349756.1 11132753 | 14 | 3155940 | 3155984 | Dermatophagoides pteronyssinus 6956 | CTG|GTAAGATTTG...GGATTATTAACA/GGATTATTAACA...TTCAG|TAC | 1 | 1 | 75.225 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);