introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
6 rows where transcript_id = 11132750
This data as json, CSV (advanced)
Suggested facets: score, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
61608265 | GT-AG | 0 | 1.000000099473604e-05 | 70 | rna-XM_027345774.1 11132750 | 1 | 2589535 | 2589604 | Dermatophagoides pteronyssinus 6956 | GAA|GTGAGTACCA...GATCCCATAATT/CATAATTTCATA...TACAG|GTC | 1 | 1 | 2.039 |
61608266 | GT-AG | 0 | 1.000000099473604e-05 | 62 | rna-XM_027345774.1 11132750 | 2 | 2592489 | 2592550 | Dermatophagoides pteronyssinus 6956 | CAA|GTGAGTAATT...AATTGTTTAACG/AATTGTTTAACG...GCCAG|TGA | 2 | 1 | 50.64 |
61608267 | GT-AG | 0 | 1.000000099473604e-05 | 51 | rna-XM_027345774.1 11132750 | 3 | 2592725 | 2592775 | Dermatophagoides pteronyssinus 6956 | AAA|GTGAGTGCCC...TTTGCCATAATC/CTAATGTTAATT...ATTAG|AAA | 2 | 1 | 53.573 |
61608268 | GT-AG | 0 | 4.073936126133496e-05 | 52 | rna-XM_027345774.1 11132750 | 4 | 2592918 | 2592969 | Dermatophagoides pteronyssinus 6956 | GAA|GTAAGTTATG...ATTTTCTTTGTT/ACGATACTAATT...TTTAG|GAA | 0 | 1 | 55.966 |
61608269 | GT-AG | 0 | 1.000000099473604e-05 | 59 | rna-XM_027345774.1 11132750 | 5 | 2593976 | 2594034 | Dermatophagoides pteronyssinus 6956 | CTG|GTCAGTATTC...CTTTCTTTTGCT/GATATATTAATC...ATCAG|CAG | 1 | 1 | 72.919 |
61608270 | GT-AG | 0 | 0.0814887186405152 | 55 | rna-XM_027345774.1 11132750 | 6 | 2594172 | 2594226 | Dermatophagoides pteronyssinus 6956 | GAG|GTATTTTTTC...CATATTTTAATT/CATATTTTAATT...TTCAG|GTA | 0 | 1 | 75.228 |
Advanced export
JSON shape: default, array, newline-delimited, object
CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);