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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 11132746

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Suggested facets: score, length, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
61608249 GT-AG 0 0.0129291800115221 3102 rna-XM_027341939.1 11132746 1 2050799 2053900 Dermatophagoides pteronyssinus 6956 CCG|GTATGTTTTT...ATTTTTTTCATT/ATTTTTTTCATT...TTCAG|GTG 1 1 1.674
61608250 GT-AG 0 1.000000099473604e-05 1940 rna-XM_027341939.1 11132746 2 2055352 2057291 Dermatophagoides pteronyssinus 6956 TTG|GTGAGTTCCA...TTTTTTTTAATT/TTTTTTTTAATT...TATAG|TTG 0 1 22.795
61608251 GT-AG 0 1.000000099473604e-05 5608 rna-XM_027341939.1 11132746 3 2057830 2063437 Dermatophagoides pteronyssinus 6956 CGG|GTAAGTGAAT...TTTTTCTTTTCT/TATTTGTTCATT...TACAG|AAA 1 1 30.626
61608252 GT-AG 0 4.7216677657419074e-05 15712 rna-XM_027341939.1 11132746 4 2065111 2080822 Dermatophagoides pteronyssinus 6956 ACG|GTAGGTTATA...TTATTTTTATTC/TTTTTATTCATT...CACAG|GAC 0 1 54.978
61608253 GT-AG 0 4.153150614102714e-05 65 rna-XM_027341939.1 11132746 5 2081309 2081373 Dermatophagoides pteronyssinus 6956 ACT|GTAAGTAAAA...ATTTCTTTATTT/AATTTCTTTATT...TTTAG|GAT 0 1 62.052
61608254 GT-AG 0 1.000000099473604e-05 63 rna-XM_027341939.1 11132746 6 2081461 2081523 Dermatophagoides pteronyssinus 6956 GAG|GTAATTCGAA...ATTTTTCTAATT/ATTTTTCTAATT...TTTAG|ATA 0 1 63.319
61608255 GT-AG 0 0.0330273214045838 65 rna-XM_027341939.1 11132746 7 2081671 2081735 Dermatophagoides pteronyssinus 6956 CAG|GTATTTTTAA...TTGATCTTGATG/TTTATATTTATT...TTTAG|ATT 0 1 65.459
61608256 GT-AG 0 1.000000099473604e-05 96 rna-XM_027341939.1 11132746 8 2082738 2082833 Dermatophagoides pteronyssinus 6956 AAG|GTTAGTGTTT...GGAATTTTATCA/AATTGTCTAATG...TATAG|CCA 0 1 80.044

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 65.986ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)