introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
8 rows where transcript_id = 11132746
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Suggested facets: score, length, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
61608249 | GT-AG | 0 | 0.0129291800115221 | 3102 | rna-XM_027341939.1 11132746 | 1 | 2050799 | 2053900 | Dermatophagoides pteronyssinus 6956 | CCG|GTATGTTTTT...ATTTTTTTCATT/ATTTTTTTCATT...TTCAG|GTG | 1 | 1 | 1.674 |
61608250 | GT-AG | 0 | 1.000000099473604e-05 | 1940 | rna-XM_027341939.1 11132746 | 2 | 2055352 | 2057291 | Dermatophagoides pteronyssinus 6956 | TTG|GTGAGTTCCA...TTTTTTTTAATT/TTTTTTTTAATT...TATAG|TTG | 0 | 1 | 22.795 |
61608251 | GT-AG | 0 | 1.000000099473604e-05 | 5608 | rna-XM_027341939.1 11132746 | 3 | 2057830 | 2063437 | Dermatophagoides pteronyssinus 6956 | CGG|GTAAGTGAAT...TTTTTCTTTTCT/TATTTGTTCATT...TACAG|AAA | 1 | 1 | 30.626 |
61608252 | GT-AG | 0 | 4.7216677657419074e-05 | 15712 | rna-XM_027341939.1 11132746 | 4 | 2065111 | 2080822 | Dermatophagoides pteronyssinus 6956 | ACG|GTAGGTTATA...TTATTTTTATTC/TTTTTATTCATT...CACAG|GAC | 0 | 1 | 54.978 |
61608253 | GT-AG | 0 | 4.153150614102714e-05 | 65 | rna-XM_027341939.1 11132746 | 5 | 2081309 | 2081373 | Dermatophagoides pteronyssinus 6956 | ACT|GTAAGTAAAA...ATTTCTTTATTT/AATTTCTTTATT...TTTAG|GAT | 0 | 1 | 62.052 |
61608254 | GT-AG | 0 | 1.000000099473604e-05 | 63 | rna-XM_027341939.1 11132746 | 6 | 2081461 | 2081523 | Dermatophagoides pteronyssinus 6956 | GAG|GTAATTCGAA...ATTTTTCTAATT/ATTTTTCTAATT...TTTAG|ATA | 0 | 1 | 63.319 |
61608255 | GT-AG | 0 | 0.0330273214045838 | 65 | rna-XM_027341939.1 11132746 | 7 | 2081671 | 2081735 | Dermatophagoides pteronyssinus 6956 | CAG|GTATTTTTAA...TTGATCTTGATG/TTTATATTTATT...TTTAG|ATT | 0 | 1 | 65.459 |
61608256 | GT-AG | 0 | 1.000000099473604e-05 | 96 | rna-XM_027341939.1 11132746 | 8 | 2082738 | 2082833 | Dermatophagoides pteronyssinus 6956 | AAG|GTTAGTGTTT...GGAATTTTATCA/AATTGTCTAATG...TATAG|CCA | 0 | 1 | 80.044 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);