introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
13 rows where transcript_id = 11132745
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Suggested facets: dinucleotide_pair, score, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
61608236 | GT-AG | 0 | 0.0004090887816393 | 23406 | rna-XM_027339220.1 11132745 | 1 | 3239353 | 3262758 | Dermatophagoides pteronyssinus 6956 | AAG|GTATGTAACT...TTCTACTTAATT/TTTCTACTTAAT...CACAG|TTA | 1 | 1 | 12.698 |
61608237 | GC-AG | 0 | 1.000000099473604e-05 | 13048 | rna-XM_027339220.1 11132745 | 2 | 3263350 | 3276397 | Dermatophagoides pteronyssinus 6956 | AAG|GCAAGTGTTA...ATCTTTTTATTT/TTTTTATTTATT...TAAAG|GCA | 1 | 1 | 20.785 |
61608238 | GT-AG | 0 | 0.0003019250118028 | 70 | rna-XM_027339220.1 11132745 | 3 | 3276530 | 3276599 | Dermatophagoides pteronyssinus 6956 | CCG|GTAAATATTT...TTTCTTTTAATA/TTTCTTTTAATA...CGAAG|ATA | 1 | 1 | 22.592 |
61608239 | GT-AG | 0 | 0.0007448658473098 | 3341 | rna-XM_027339220.1 11132745 | 4 | 3276753 | 3280093 | Dermatophagoides pteronyssinus 6956 | CAG|GTATTCCAAA...CATTTTTTACAA/TTTTGTTTCATT...ATTAG|GTG | 1 | 1 | 24.685 |
61608240 | GT-AG | 0 | 1.000000099473604e-05 | 1884 | rna-XM_027339220.1 11132745 | 5 | 3281174 | 3283057 | Dermatophagoides pteronyssinus 6956 | TGG|GTAAGTAGTC...GATTCTTTCATT/GATTCTTTCATT...AATAG|ATC | 1 | 1 | 39.464 |
61608241 | GT-AG | 0 | 0.0633201797567019 | 84 | rna-XM_027339220.1 11132745 | 6 | 3283505 | 3283588 | Dermatophagoides pteronyssinus 6956 | AAG|GTATGTTTGT...AATACCTTAATT/TTATTATTAATT...CACAG|ATG | 1 | 1 | 45.58 |
61608242 | GT-AG | 0 | 2.955013713187068e-05 | 141 | rna-XM_027339220.1 11132745 | 7 | 3283659 | 3283799 | Dermatophagoides pteronyssinus 6956 | CAG|GTAGGTTATG...TTGCTTTTATCT/TTTATCTTCATA...GTTAG|CAA | 2 | 1 | 46.538 |
61608243 | GT-AG | 0 | 0.0039656690296898 | 65 | rna-XM_027339220.1 11132745 | 8 | 3283904 | 3283968 | Dermatophagoides pteronyssinus 6956 | TCA|GTAAGCTTTG...ATTATTTGAATT/TCGATATTTATA...TTTAG|CTG | 1 | 1 | 47.961 |
61608244 | GT-AG | 0 | 1.000000099473604e-05 | 55 | rna-XM_027339220.1 11132745 | 9 | 3284254 | 3284308 | Dermatophagoides pteronyssinus 6956 | ATG|GTAAAAATTG...CATTTCGTATTT/GTGTTAATGATT...AATAG|TGG | 1 | 1 | 51.861 |
61608245 | GT-AG | 0 | 0.0007092864595598 | 61 | rna-XM_027339220.1 11132745 | 10 | 3284675 | 3284735 | Dermatophagoides pteronyssinus 6956 | ATT|GTAAGTTCTT...TTGTTCTCAATT/TGTATTCTAATT...ATAAG|TTC | 1 | 1 | 56.869 |
61608246 | GT-AG | 0 | 0.0008323900363039 | 67 | rna-XM_027339220.1 11132745 | 11 | 3285573 | 3285639 | Dermatophagoides pteronyssinus 6956 | AAC|GTAAGTTTTA...ATCTTTTTATTT/CTCTTTTTCATC...GTTAG|CTC | 1 | 1 | 68.322 |
61608247 | GT-AG | 0 | 0.0003988246243819 | 56 | rna-XM_027339220.1 11132745 | 12 | 3285956 | 3286011 | Dermatophagoides pteronyssinus 6956 | AAA|GTTTGTTAAA...TGATTTTTAAAA/TTGATTTTTAAA...CTTAG|AAT | 2 | 1 | 72.646 |
61608248 | GT-AG | 0 | 0.004503713121686 | 60 | rna-XM_027339220.1 11132745 | 13 | 3287259 | 3287318 | Dermatophagoides pteronyssinus 6956 | GAG|GTATTTTCAA...TTTGTTTTATAT/ATTTGTTTTATA...ATTAG|AAC | 1 | 1 | 89.71 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);