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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

13 rows where transcript_id = 11132745

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Suggested facets: dinucleotide_pair, score, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
61608236 GT-AG 0 0.0004090887816393 23406 rna-XM_027339220.1 11132745 1 3239353 3262758 Dermatophagoides pteronyssinus 6956 AAG|GTATGTAACT...TTCTACTTAATT/TTTCTACTTAAT...CACAG|TTA 1 1 12.698
61608237 GC-AG 0 1.000000099473604e-05 13048 rna-XM_027339220.1 11132745 2 3263350 3276397 Dermatophagoides pteronyssinus 6956 AAG|GCAAGTGTTA...ATCTTTTTATTT/TTTTTATTTATT...TAAAG|GCA 1 1 20.785
61608238 GT-AG 0 0.0003019250118028 70 rna-XM_027339220.1 11132745 3 3276530 3276599 Dermatophagoides pteronyssinus 6956 CCG|GTAAATATTT...TTTCTTTTAATA/TTTCTTTTAATA...CGAAG|ATA 1 1 22.592
61608239 GT-AG 0 0.0007448658473098 3341 rna-XM_027339220.1 11132745 4 3276753 3280093 Dermatophagoides pteronyssinus 6956 CAG|GTATTCCAAA...CATTTTTTACAA/TTTTGTTTCATT...ATTAG|GTG 1 1 24.685
61608240 GT-AG 0 1.000000099473604e-05 1884 rna-XM_027339220.1 11132745 5 3281174 3283057 Dermatophagoides pteronyssinus 6956 TGG|GTAAGTAGTC...GATTCTTTCATT/GATTCTTTCATT...AATAG|ATC 1 1 39.464
61608241 GT-AG 0 0.0633201797567019 84 rna-XM_027339220.1 11132745 6 3283505 3283588 Dermatophagoides pteronyssinus 6956 AAG|GTATGTTTGT...AATACCTTAATT/TTATTATTAATT...CACAG|ATG 1 1 45.58
61608242 GT-AG 0 2.955013713187068e-05 141 rna-XM_027339220.1 11132745 7 3283659 3283799 Dermatophagoides pteronyssinus 6956 CAG|GTAGGTTATG...TTGCTTTTATCT/TTTATCTTCATA...GTTAG|CAA 2 1 46.538
61608243 GT-AG 0 0.0039656690296898 65 rna-XM_027339220.1 11132745 8 3283904 3283968 Dermatophagoides pteronyssinus 6956 TCA|GTAAGCTTTG...ATTATTTGAATT/TCGATATTTATA...TTTAG|CTG 1 1 47.961
61608244 GT-AG 0 1.000000099473604e-05 55 rna-XM_027339220.1 11132745 9 3284254 3284308 Dermatophagoides pteronyssinus 6956 ATG|GTAAAAATTG...CATTTCGTATTT/GTGTTAATGATT...AATAG|TGG 1 1 51.861
61608245 GT-AG 0 0.0007092864595598 61 rna-XM_027339220.1 11132745 10 3284675 3284735 Dermatophagoides pteronyssinus 6956 ATT|GTAAGTTCTT...TTGTTCTCAATT/TGTATTCTAATT...ATAAG|TTC 1 1 56.869
61608246 GT-AG 0 0.0008323900363039 67 rna-XM_027339220.1 11132745 11 3285573 3285639 Dermatophagoides pteronyssinus 6956 AAC|GTAAGTTTTA...ATCTTTTTATTT/CTCTTTTTCATC...GTTAG|CTC 1 1 68.322
61608247 GT-AG 0 0.0003988246243819 56 rna-XM_027339220.1 11132745 12 3285956 3286011 Dermatophagoides pteronyssinus 6956 AAA|GTTTGTTAAA...TGATTTTTAAAA/TTGATTTTTAAA...CTTAG|AAT 2 1 72.646
61608248 GT-AG 0 0.004503713121686 60 rna-XM_027339220.1 11132745 13 3287259 3287318 Dermatophagoides pteronyssinus 6956 GAG|GTATTTTCAA...TTTGTTTTATAT/ATTTGTTTTATA...ATTAG|AAC 1 1 89.71

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 49.436ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)