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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

9 rows where transcript_id = 11132742

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Suggested facets: dinucleotide_pair, score, length, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
61608222 GC-AG 0 1.000000099473604e-05 4189 rna-XM_027349123.1 11132742 1 826969 831157 Dermatophagoides pteronyssinus 6956 ATA|GCAATGGTAA...GTATTTTGGAAT/AATGTTTCCATT...CATAG|GAA 0 1 0.301
61608223 GT-AG 0 1.000000099473604e-05 68 rna-XM_027349123.1 11132742 2 826798 826865 Dermatophagoides pteronyssinus 6956 CAG|GTTTGTCTAT...TGATTCTGATCA/ATGATTCTGATC...GATAG|CTG 1 1 1.593
61608224 GT-AG 0 7.346385961902478e-05 60 rna-XM_027349123.1 11132742 3 825650 825709 Dermatophagoides pteronyssinus 6956 AAG|GTTTGTTATC...ATTTCTTTCACT/ATTTCTTTCACT...GATAG|TGT 0 1 15.237
61608225 GT-AG 0 0.0126361056173225 81 rna-XM_027349123.1 11132742 4 825508 825588 Dermatophagoides pteronyssinus 6956 CTC|GTATACCACC...ACTACCTCGGCT/TAGTGAATTATC...TGAAG|GTT 1 1 16.002
61608226 GT-AG 0 5.969484119994872e-05 76 rna-XM_027349123.1 11132742 5 819699 819774 Dermatophagoides pteronyssinus 6956 ATG|GTAAGTTTAA...TTTTGCTTGATT/TTTTGCTTGATT...TAAAG|AAC 1 1 87.898
61608227 GT-AG 0 3.887013475404533e-05 74 rna-XM_027349123.1 11132742 6 819516 819589 Dermatophagoides pteronyssinus 6956 ATG|GTTTGTACAC...TTTTTTTTGATT/TTTTTTTTGATT...AAAAG|GTG 2 1 89.265
61608228 GT-AG 0 0.0001891689738165 70 rna-XM_027349123.1 11132742 7 819331 819400 Dermatophagoides pteronyssinus 6956 CAT|GTATGGATGT...ATTGCTTTGCTT/ATTGTAATAATT...CACAG|GCA 0 1 90.707
61608229 GT-AG 0 1.000000099473604e-05 54 rna-XM_027349123.1 11132742 8 819054 819107 Dermatophagoides pteronyssinus 6956 AAG|GTTAGATTTA...TTTACTTTATCC/ATTTACTTTATC...TTTAG|ATC 1 1 93.504
61608230 GT-AG 0 1.000000099473604e-05 54 rna-XM_027349123.1 11132742 9 818694 818747 Dermatophagoides pteronyssinus 6956 AAA|GTAAGTGGAA...TCAATCTTATCG/TCGATTTTCAAT...TTTAG|ATA 1 1 97.341

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 26.219ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)