introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
9 rows where transcript_id = 11132742
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Suggested facets: dinucleotide_pair, score, length, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
61608222 | GC-AG | 0 | 1.000000099473604e-05 | 4189 | rna-XM_027349123.1 11132742 | 1 | 826969 | 831157 | Dermatophagoides pteronyssinus 6956 | ATA|GCAATGGTAA...GTATTTTGGAAT/AATGTTTCCATT...CATAG|GAA | 0 | 1 | 0.301 |
61608223 | GT-AG | 0 | 1.000000099473604e-05 | 68 | rna-XM_027349123.1 11132742 | 2 | 826798 | 826865 | Dermatophagoides pteronyssinus 6956 | CAG|GTTTGTCTAT...TGATTCTGATCA/ATGATTCTGATC...GATAG|CTG | 1 | 1 | 1.593 |
61608224 | GT-AG | 0 | 7.346385961902478e-05 | 60 | rna-XM_027349123.1 11132742 | 3 | 825650 | 825709 | Dermatophagoides pteronyssinus 6956 | AAG|GTTTGTTATC...ATTTCTTTCACT/ATTTCTTTCACT...GATAG|TGT | 0 | 1 | 15.237 |
61608225 | GT-AG | 0 | 0.0126361056173225 | 81 | rna-XM_027349123.1 11132742 | 4 | 825508 | 825588 | Dermatophagoides pteronyssinus 6956 | CTC|GTATACCACC...ACTACCTCGGCT/TAGTGAATTATC...TGAAG|GTT | 1 | 1 | 16.002 |
61608226 | GT-AG | 0 | 5.969484119994872e-05 | 76 | rna-XM_027349123.1 11132742 | 5 | 819699 | 819774 | Dermatophagoides pteronyssinus 6956 | ATG|GTAAGTTTAA...TTTTGCTTGATT/TTTTGCTTGATT...TAAAG|AAC | 1 | 1 | 87.898 |
61608227 | GT-AG | 0 | 3.887013475404533e-05 | 74 | rna-XM_027349123.1 11132742 | 6 | 819516 | 819589 | Dermatophagoides pteronyssinus 6956 | ATG|GTTTGTACAC...TTTTTTTTGATT/TTTTTTTTGATT...AAAAG|GTG | 2 | 1 | 89.265 |
61608228 | GT-AG | 0 | 0.0001891689738165 | 70 | rna-XM_027349123.1 11132742 | 7 | 819331 | 819400 | Dermatophagoides pteronyssinus 6956 | CAT|GTATGGATGT...ATTGCTTTGCTT/ATTGTAATAATT...CACAG|GCA | 0 | 1 | 90.707 |
61608229 | GT-AG | 0 | 1.000000099473604e-05 | 54 | rna-XM_027349123.1 11132742 | 8 | 819054 | 819107 | Dermatophagoides pteronyssinus 6956 | AAG|GTTAGATTTA...TTTACTTTATCC/ATTTACTTTATC...TTTAG|ATC | 1 | 1 | 93.504 |
61608230 | GT-AG | 0 | 1.000000099473604e-05 | 54 | rna-XM_027349123.1 11132742 | 9 | 818694 | 818747 | Dermatophagoides pteronyssinus 6956 | AAA|GTAAGTGGAA...TCAATCTTATCG/TCGATTTTCAAT...TTTAG|ATA | 1 | 1 | 97.341 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);