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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

6 rows where transcript_id = 11132737

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id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
61608197 GT-AG 0 0.0004069317147764 51 rna-XM_027339802.1 11132737 1 970479 970529 Dermatophagoides pteronyssinus 6956 TTA|GTAAGTTTAT...TATTATTTAACA/TATTATTTAACA...TTTAG|TTG 2 1 9.143
61608198 GT-AG 0 0.000208000022109 68 rna-XM_027339802.1 11132737 2 971755 971822 Dermatophagoides pteronyssinus 6956 TAT|GTAAGTTTTT...ATGTTTTTCATT/ATGTTTTTCATT...TTTAG|CAA 0 1 19.61
61608199 GT-AG 0 1.2495845976222088e-05 53 rna-XM_027339802.1 11132737 3 971851 971903 Dermatophagoides pteronyssinus 6956 GTG|GTAAGTTCAA...ATTTTTTTATAT/TATTTTTTTATA...GATAG|AAT 1 1 19.85
61608200 GT-AG 0 0.0031924580220781 67 rna-XM_027339802.1 11132737 4 977958 978024 Dermatophagoides pteronyssinus 6956 GTT|GTAAGTTTAA...CCATTCTTAAAT/ATTAATTTCAAT...ACAAG|TAA 1 1 71.58
61608201 GT-AG 0 1.4114158773476109 70 rna-XM_027339802.1 11132737 5 978420 978489 Dermatophagoides pteronyssinus 6956 CTG|GTATCTAATG...TTTTTTTTAAAA/ATTATTTTTATT...AATAG|TTA 0 1 74.955
61608202 GT-AG 0 1.2685182858998147e-05 63 rna-XM_027339802.1 11132737 6 981307 981369 Dermatophagoides pteronyssinus 6956 ATG|GTAAGCATAT...CTTATTTTATTG/ACTTATTTTATT...TACAG|GAT 0 1 99.026

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 50.577ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)