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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 11121969

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id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
61578115 GT-AG 0 6.315833405085896e-05 65 rna-XM_047060025.1 11121969 1 11948053 11948117 Dermatophagoides farinae 6954 CAG|GTATAAAATT...AAATTTTTAAAC/AATAATTTCATT...AATAG|CTA 0 1 0.835
61578116 GT-AG 0 1.000000099473604e-05 55 rna-XM_047060025.1 11121969 2 11948595 11948649 Dermatophagoides farinae 6954 CAG|GTAAAATAAA...TTCTTTTTGATT/TTCTTTTTGATT...AATAG|AGC 0 1 10.322
61578117 GT-AG 0 1.000000099473604e-05 73 rna-XM_047060025.1 11121969 3 11948812 11948884 Dermatophagoides farinae 6954 AAG|GTAATAAAAT...TAAATTTCAATT/CTAAATTTCAAT...TGTAG|CTT 0 1 13.544
61578118 GT-AG 0 5.553644735288291e-05 52 rna-XM_047060025.1 11121969 4 11949173 11949224 Dermatophagoides farinae 6954 CAG|GTACGATTTA...TAATTTTTGATT/TAATTTTTGATT...TATAG|GTT 0 1 19.272
61578119 GT-AG 0 4.949192416184158e-05 54 rna-XM_047060025.1 11121969 5 11951175 11951228 Dermatophagoides farinae 6954 CAG|GTTTGTTGTT...TCGTACTTGATA/TCGTACTTGATA...TCAAG|GTG 0 1 58.055
61578120 GT-AG 0 4.525642618212979e-05 49 rna-XM_047060025.1 11121969 6 11952232 11952280 Dermatophagoides farinae 6954 TAG|GTAGGCGTTA...TTTTTCATAATT/ATGTTTTTCATA...CTTAG|GAT 1 1 78.003
61578121 GT-AG 0 1.000000099473604e-05 71 rna-XM_047060025.1 11121969 7 11952682 11952752 Dermatophagoides farinae 6954 AAG|GTAATGTTTG...GCAACTTTATTT/AATGTTTTTATA...TTCAG|ACA 0 1 85.979

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 24.506ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)