introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 11121925

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Suggested facets: score, length, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
61577805 GT-AG 0 1.000000099473604e-05 1555 rna-XM_047064329.1 11121925 1 1914323 1915877 Dermatophagoides farinae 6954 GAG|GTAAGAAAGA...TTTTCATTATTC/TTCTTTTTCATT...TATAG|GAT 0 1 4.436
61577806 GT-AG 0 0.0005077196204994 92 rna-XM_047064329.1 11121925 2 1916071 1916162 Dermatophagoides farinae 6954 GAG|GTAATTTTTT...TTTGTTTTAATT/TTTTTTTTCATT...AATAG|AGG 1 1 7.349
61577807 GT-AG 0 0.0009371778419631 72 rna-XM_047064329.1 11121925 3 1916273 1916344 Dermatophagoides farinae 6954 TAT|GTGTGTATTC...CTTCTTTTATCA/TTAATATTTATC...ATTAG|TTA 0 1 9.009
61577808 GT-AG 0 3.142836868172456e-05 64 rna-XM_047064329.1 11121925 4 1919384 1919447 Dermatophagoides farinae 6954 ATG|GTAAACAAAA...TTAATCTTATTT/TTAATTTTAATT...CGCAG|GAC 0 1 54.866
61577809 GT-AG 0 0.0001456651338172 78 rna-XM_047064329.1 11121925 5 1919677 1919754 Dermatophagoides farinae 6954 AAA|GTAATTTGAT...ATTTCATTATCT/AAACATTTCATT...ATTAG|ATT 1 1 58.322
61577810 GT-AG 0 0.0005722524866996 70 rna-XM_047064329.1 11121925 6 1919896 1919965 Dermatophagoides farinae 6954 CTG|GTATGATGAT...TTTTTTTTAATT/TTTTTTTTAATT...CAAAG|GCT 1 1 60.45
61577811 GT-AG 0 0.0001617871987069 63 rna-XM_047064329.1 11121925 7 1921240 1921302 Dermatophagoides farinae 6954 AAG|GTATTAATGA...ATATTTTTATTT/TATATTTTTATT...AAAAG|GAA 0 1 79.674
61577812 GT-AG 0 1.000000099473604e-05 63 rna-XM_047064329.1 11121925 8 1921741 1921803 Dermatophagoides farinae 6954 CAG|GTAAAAATTA...ATCATTTTAATG/TGTTAATTAATT...ATTAG|GAG 0 1 86.283

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);