WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 11121907

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
61577668	GT-AG	1.000000099473604e-05	96	rna-XM_047062427.1 11121907	1	13783722	13783817	Dermatophagoides farinae 6954	CAA\|GTAAGACGCG...TATTTCCAATTA/ATATTTCCAATT...TATAG\|GTA	2	1	12.149
61577669	GT-AG	2.3047710611779108e-05	61	rna-XM_047062427.1 11121907	2	13780486	13780546	Dermatophagoides farinae 6954	CAC\|GTAAGTTAGG...CTTTTCTCATTT/TCTTTTCTCATT...AACAG\|AAA	0	1	56.081
61577670	GT-AG	0.5378890830551603	833	rna-XM_047062427.1 11121907	3	13779152	13779984	Dermatophagoides farinae 6954	ATA\|GTTTCCTAAA...TCCACATCAACA/TACAATGTCATC...ATTAG\|ATA	0	1	63.014
61577671	GT-AG	1.000000099473604e-05	60	rna-XM_047062427.1 11121907	5	13778602	13778661	Dermatophagoides farinae 6954	AAT\|GTAAGTACAT...GTGTGTTTAACC/GTGTGTTTAACC...CATAG\|ATA	2	1	69.766
61577672	GT-AG	1.000000099473604e-05	69	rna-XM_047062427.1 11121907	6	13777776	13777844	Dermatophagoides farinae 6954	AAG\|GTAAGCAGAC...ATCTTTGTGATT/TTGTGATTGACA...TACAG\|CAA	0	1	80.241
61577673	GT-AG	1.6633721002929345e-05	68	rna-XM_047062427.1 11121907	7	13777035	13777102	Dermatophagoides farinae 6954	CTT\|GTAAGTGATT...TTTCTTTTATCG/ATTTCTTTTATC...AATAG\|CCC	1	1	89.553
61577674	GT-AG	2.422336459768545e-05	65	rna-XM_047062427.1 11121907	8	13776854	13776918	Dermatophagoides farinae 6954	CGA\|GTAAGATGTG...ACAACTTTAATA/ACAACTTTAATA...CATAG\|ATT	0	1	91.158
61577675	GT-AG	1.4832392049669302e-05	74	rna-XM_047062427.1 11121907	9	13776356	13776429	Dermatophagoides farinae 6954	GCG\|GTTCGTTCAT...TGTTGCTTGATA/TTAATTGTGATT...CACAG\|GTG	1	1	97.025

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);