WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 11121898

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
61577605	GT-AG	1.000000099473604e-05	438	rna-XM_047063116.1 11121898	1	3491256	3491693	Dermatophagoides farinae 6954	TAT\|GTAATGACCA...TAAAATTTAACC/TAAAATTTAACC...TATAG\|TTC	0	1	0.137
61577606	GT-AG	4.819586829878122e-05	6030	rna-XM_047063116.1 11121898	2	3491865	3497894	Dermatophagoides farinae 6954	ATG\|GTAAGTTTCA...CTTTTTTTATAA/TCTTTTTTTATA...TATAG\|AAC	0	1	2.093
61577607	GT-AG	0.0013813513685314	876	rna-XM_047063116.1 11121898	3	3497949	3498824	Dermatophagoides farinae 6954	TTG\|GTATGTATCA...TATTTCTAATTT/CTATTTCTAATT...TCAAG\|TGC	0	1	2.711
61577608	GT-AG	0.0001184973590748	89	rna-XM_047063116.1 11121898	4	3499035	3499123	Dermatophagoides farinae 6954	CAA\|GTAAGTTCTA...ATTTTTTTATCT/TTTATCTTCATT...ATTAG\|GAC	0	1	5.113
61577609	GT-AG	1.000000099473604e-05	69	rna-XM_047063116.1 11121898	5	3501288	3501356	Dermatophagoides farinae 6954	CTG\|GTAAGTTAAT...GATGATTTAAAT/TTAAATTTCATT...ATCAG\|GTG	1	1	29.867
61577610	GT-AG	1.000000099473604e-05	66	rna-XM_047063116.1 11121898	6	3501536	3501601	Dermatophagoides farinae 6954	ATG\|GTACGGTAAT...TTAATCGTGAAA/ATCAAATTAATG...ATTAG\|ATT	0	1	31.915
61577611	GT-AG	3.4246177209182296e-05	79	rna-XM_047063116.1 11121898	7	3506486	3506564	Dermatophagoides farinae 6954	GAT\|GTAAGTCTTA...TTATTTTTCATT/TTATTTTTCATT...AATAG\|GTA	0	1	87.783
61577612	GT-AG	0.0001059589470341	77	rna-XM_047063116.1 11121898	8	3506705	3506781	Dermatophagoides farinae 6954	AAT\|GTAAGTTAAT...GTTTTTTTATTT/CGTTTTTTTATT...AATAG\|GTA	2	1	89.385

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);