WtMTA: introns: 7 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 1076613

descending

id ▼	dinucleotide_pair	is_minor	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
5510146	GT-AG	0	1.000000099473604e-05	50658	rna-XM_006257952.3 1076613	1	656654	707311	Alligator mississippiensis 8496	GCG\|GTGAGCGCCG...TGTTCTTTCTCT/TGGTATCTAAAA...CCTAG\|TGG	1	1	11.164
5510147	GT-AG	0	1.000000099473604e-05	5820	rna-XM_006257952.3 1076613	2	707371	713190	Alligator mississippiensis 8496	CAG\|GTAAAATGAT...ACTGTTTTAACT/ACTGTTTTAACT...TACAG\|GCA	0	1	20.574
5510148	GT-AG	0	1.000000099473604e-05	1491	rna-XM_006257952.3 1076613	3	713245	714735	Alligator mississippiensis 8496	ACC\|GTGAGTAAGA...TTTTCTTTAATT/TTTTCTTTAATT...CACAG\|ATC	0	1	29.187
5510149	GT-AG	0	1.000000099473604e-05	2098	rna-XM_006257952.3 1076613	4	714842	716939	Alligator mississippiensis 8496	CAA\|GTAGGTATAT...TTTGCAGTGACA/TTTGCAGTGACA...GCTAG\|ATG	1	1	46.093
5510150	GT-AG	0	1.000000099473604e-05	1344	rna-XM_006257952.3 1076613	5	717052	718395	Alligator mississippiensis 8496	GAG\|GTATGGCAAA...GGGTCTTTTGTC/TTGCATCTGATG...CCCAG\|GCA	2	1	63.955
5510151	GT-AG	0	1.000000099473604e-05	12642	rna-XM_006257952.3 1076613	6	718490	731131	Alligator mississippiensis 8496	CAG\|GTAAGTGACC...TTGTTCTTCGCA/ACGTTTCTAACT...TGCAG\|CTT	0	1	78.947
5510152	GT-AG	1	99.99943174515028	2662	rna-XM_006257952.3 1076613	7	731199	733860	Alligator mississippiensis 8496	ACA\|GTATCCTTTT...TTTGCCTTAACT/AGACTTCTCACC...TCCAG\|TGA	1	1	89.633

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);