WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 10378465

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
57023103	GT-AG	1.000000099473604e-05	3250	rna-XM_025114555.1 10378465	1	38430618	38433867	Cynara cardunculus 4265	CAG\|GTAAATTAAG...TTCTGTTTAATC/TTCTGTTTAATC...TACAG\|GCC	0	1	2.351
57023104	GT-AG	6.982174267710609e-05	426	rna-XM_025114555.1 10378465	2	38433955	38434380	Cynara cardunculus 4265	AAT\|GTAAGTTTGA...TAATCTTGGATC/GAGTATTTGATA...TTCAG\|GAT	0	1	4.973
57023105	GT-AG	0.0009718482999084	10638	rna-XM_025114555.1 10378465	3	38434471	38445108	Cynara cardunculus 4265	ACC\|GTAAGTTGTT...TTTATTTTGATT/TTTATTTTGATT...TCTAG\|CCG	0	1	7.685
57023106	GT-AG	1.000000099473604e-05	133	rna-XM_025114555.1 10378465	4	38445190	38445322	Cynara cardunculus 4265	TTG\|GTAAGAGTTT...GGTGGCTTAATT/TAATTGTTCACT...TCTAG\|ATC	0	1	10.127
57023107	GT-AG	1.000000099473604e-05	174	rna-XM_025114555.1 10378465	5	38445518	38445691	Cynara cardunculus 4265	AAG\|GTACAGCATC...ATTACTTTCAAA/ATTACTTTCAAA...TTCAG\|GAC	0	1	16.004
57023108	GT-AG	0.001487574733327	949	rna-XM_025114555.1 10378465	6	38447825	38448773	Cynara cardunculus 4265	CAG\|GTATATAATA...ATATCTTTATTA/TCTTTATTAATT...CTCAG\|GTA	0	1	80.289
57023109	GT-AG	3.79801852887835e-05	1259	rna-XM_025114555.1 10378465	7	38448921	38450179	Cynara cardunculus 4265	CAA\|GTAAGATTAG...ATATCCTTATCC/GATATCCTTATC...AATAG\|CTG	0	1	84.72
57023110	GT-AG	0.0001389422789956	1938	rna-XM_025114555.1 10378465	8	38450554	38452491	Cynara cardunculus 4265	TAG\|GTATTGCTAT...GTATATTTAACA/AATCGTTTAATT...TGCAG\|CCG	2	1	95.992

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);