WtMTA: introns: 7 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 10378460

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
57023035	GT-AG	0.0049124309184857	206	rna-XM_025138004.1 10378460	1	25662343	25662548	Cynara cardunculus 4265	AAG\|GTAACCTGGT...AAGTTCTGATTT/AAAGTTCTGATT...TTCAG\|GAT	0	1	71.263
57023036	GT-AG	4.396749680128733e-05	1468	rna-XM_025138004.1 10378460	2	25662642	25664109	Cynara cardunculus 4265	CAG\|GTACTGTACA...CTTATTTTGACC/CTTATTTTGACC...TGCAG\|ACC	0	1	74.021
57023037	GT-AG	1.000000099473604e-05	318	rna-XM_025138004.1 10378460	3	25664263	25664580	Cynara cardunculus 4265	TTG\|GTAGGTCACA...TTATTCTTTATG/ATTATTGTTATT...CGCAG\|ACC	0	1	78.559
57023038	GT-AG	1.000000099473604e-05	67	rna-XM_025138004.1 10378460	4	25664745	25664811	Cynara cardunculus 4265	TAG\|GTGAGTCTGA...CAACTCTTAAAC/TTCTCCTTCAAA...TGCAG\|AGT	2	1	83.422
57023039	GT-AG	1.000000099473604e-05	230	rna-XM_025138004.1 10378460	5	25664960	25665189	Cynara cardunculus 4265	AAG\|GTAAGAAGCA...TGTGTTTTATAT/TTGTGTTTTATA...ATTAG\|GTT	0	1	87.811
57023040	GT-AG	2.83829573578728e-05	69	rna-XM_025138004.1 10378460	6	25665313	25665381	Cynara cardunculus 4265	AAA\|GTAAGTTATA...CATTTCTTGTTT/TCCTCTCTGATT...GGCAG\|GTC	0	1	91.459
57023041	GT-AG	1.000000099473604e-05	263	rna-XM_025138004.1 10378460	7	25665470	25665732	Cynara cardunculus 4265	TAG\|GTAACACCAT...CATGTTGTGATG/AAGTAGTTCATA...CAAAG\|GTG	1	1	94.069

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);