WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 1028953

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
5357629	GT-AG	6.013686000716007e-05	133	rna-AFUS01_LOCUS56 1028953	1	229778	229910	Allacma fusca 39272	CAT\|GTAAGATTTT...CGGTTTTTAATA/TTTATTTTTATT...TTCAG\|TTA	1	1	2.916
5357630	GT-AG	1.000000099473604e-05	102	rna-AFUS01_LOCUS56 1028953	2	230138	230239	Allacma fusca 39272	AAG\|GTAGTGGGGA...GTATATTTGATT/ATTGCTCTCACC...TTTAG\|GGA	0	1	20.804
5357631	GT-AG	2.7750556315512195e-05	199	rna-AFUS01_LOCUS56 1028953	3	230321	230519	Allacma fusca 39272	GAC\|GTAAGTTATT...TTGCATTTGAAA/TATAGATTCAAA...TTCAG\|GAA	0	1	27.187
5357632	GT-AG	1.162751827906163e-05	217	rna-AFUS01_LOCUS56 1028953	4	230620	230836	Allacma fusca 39272	TTG\|GTAAGTTTGA...GATTTTGTGACA/TTTAAATTCAAT...TATAG\|GCT	1	1	35.067
5357633	GT-AG	1.000000099473604e-05	129	rna-AFUS01_LOCUS56 1028953	5	230932	231060	Allacma fusca 39272	GAG\|GTAAGGATTC...GTGTTGTTGATT/TGAATTTTCATT...TATAG\|GGA	0	1	42.553
5357634	GT-AG	2.1980983346764726e-05	240	rna-AFUS01_LOCUS56 1028953	6	231174	231413	Allacma fusca 39272	CAG\|GTAAATTATC...GTTTACTTATTT/CGTTTACTTATT...TTCAG\|ATT	2	1	51.458
5357635	GT-AG	7.414531537309526e-05	77	rna-AFUS01_LOCUS56 1028953	7	231514	231590	Allacma fusca 39272	GAG\|GTACACAGAT...AATCTTTTAGGA/GTGTATATAATT...TTAAG\|GTT	0	1	59.338
5357636	GT-AG	6.144573602957754e-05	98	rna-AFUS01_LOCUS56 1028953	8	231868	231965	Allacma fusca 39272	CAG\|GTTTAACTTT...TTTTTTTTAACC/TTTTTTTTAACC...TTTAG\|AAA	1	1	81.166

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);