WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 10143871

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
55681714	GT-AG	1.000000099473604e-05	987	rna-XM_023674371.1 10143871	2	10590548	10591534	Cucurbita pepo 3663	GAG\|GTTAGCAAAT...TTGCTCTTACAT/ATTTATCTGATT...GGCAG\|CTT	0	1	12.452
55681715	GT-AG	0.3931506169016436	507	rna-XM_023674371.1 10143871	3	10589831	10590337	Cucurbita pepo 3663	AGT\|GTATGCTATT...AATTTCATACCT/AGTAATTTCATA...TGCAG\|CTT	0	1	18.174
55681716	GT-AG	0.2878146690876947	1227	rna-XM_023674371.1 10143871	4	10588350	10589576	Cucurbita pepo 3663	AAG\|GTATTCTTCT...TCTTCTTTACTT/TCTTTACTTATT...TTTAG\|GAA	2	1	25.095
55681717	GT-AG	1.000000099473604e-05	135	rna-XM_023674371.1 10143871	5	10587944	10588078	Cucurbita pepo 3663	AAG\|GTAAAACAAC...TTTTTTTTTTCC/TTTTTTTCCATT...TGCAG\|GAA	0	1	32.48
55681718	GT-AG	2.6843275402732524e-05	565	rna-XM_023674371.1 10143871	6	10587295	10587859	Cucurbita pepo 3663	AGG\|GTAAGTTGAT...GTCTTCTTGATG/ATGTGTCTTATA...TTCAG\|ATG	0	1	34.768
55681719	GT-AG	0.0001062184028307	966	rna-XM_023674371.1 10143871	7	10584356	10585321	Cucurbita pepo 3663	AAT\|GTTAGTTTCC...TGCACCTTAATC/ATGCACCTTAAT...TGCAG\|TGG	2	1	88.529
55681720	GT-AG	1.000000099473604e-05	87	rna-XM_023674371.1 10143871	8	10584052	10584138	Cucurbita pepo 3663	GAG\|GTAAAAAAAT...TTGTTCTTAGTT/CTTGTTCTTAGT...TACAG\|TTT	0	1	94.441
55693027	GT-AG	0.0001605712767656	170	rna-XM_023674371.1 10143871	1	10591878	10592047	Cucurbita pepo 3663	GAC\|GTTAGCTTCT...TGTTCTTCAACC/TTATTTCTGACT...AACAG\|AAC		0	6.485

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);