WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 10143847

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
55681385	GT-AG	1.000000099473604e-05	92	rna-XM_023677311.1 10143847	1	19963971	19964062	Cucurbita pepo 3663	AAG\|GTTTTAATTT...ATTATTTTACTC/GATTATTTTACT...TGCAG\|TAT	0	1	6.635
55681386	GT-AG	1.000000099473604e-05	83	rna-XM_023677311.1 10143847	2	19963833	19963915	Cucurbita pepo 3663	CCG\|GTAAGTAAAA...GAGCATTTGATT/GAGCATTTGATT...TACAG\|AGA	1	1	8.1
55681387	GT-AG	1.000000099473604e-05	237	rna-XM_023677311.1 10143847	3	19963420	19963656	Cucurbita pepo 3663	AAG\|GTAATTCCTT...TTCTTTTTAAGG/CTGGGTTTGATT...TGTAG\|GTG	0	1	12.79
55681388	GT-AG	1.000000099473604e-05	104	rna-XM_023677311.1 10143847	4	19963115	19963218	Cucurbita pepo 3663	CAG\|GTAAAGTTCT...TGTTTCATAAAC/ATTTGTTTCATA...AACAG\|GCG	0	1	18.145
55681389	GT-AG	0.0004689895874863	83	rna-XM_023677311.1 10143847	5	19962772	19962854	Cucurbita pepo 3663	CAT\|GTAAGTTTCT...CTTTTTTTAGCG/TCTTTTTTTAGC...TATAG\|GAG	2	1	25.073
55681390	GT-AG	3.709885953641004e-05	80	rna-XM_023677311.1 10143847	6	19962375	19962454	Cucurbita pepo 3663	AAG\|GTAAATTTAC...GTTTTTTTGAAA/ATGGTTCTGATT...AACAG\|GGC	1	1	33.52
55681391	GT-AG	1.000000099473604e-05	77	rna-XM_023677311.1 10143847	7	19961254	19961330	Cucurbita pepo 3663	CAG\|GTAAGAATCA...TTAAACTTATCA/TTTAAACTTATC...TATAG\|CGA	1	1	61.338
55681392	GT-AG	1.000000099473604e-05	1113	rna-XM_023677311.1 10143847	8	19959899	19961011	Cucurbita pepo 3663	CAG\|GTAAAAAACA...TGTACATTATTG/TTGTACATTATT...TGCAG\|CAA	0	1	67.786

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);