WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 10143843

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
55681361	GT-AG	0.0002858858773628	1292	rna-XM_023671603.1 10143843	1	18508337	18509628	Cucurbita pepo 3663	GAG\|GTTTTTTGCT...TATTCTTTTACT/TATTCTTTTACT...TCCAG\|AGG	1	1	6.698
55681362	GT-AG	0.0141512129826007	472	rna-XM_023671603.1 10143843	2	18509676	18510147	Cucurbita pepo 3663	GCT\|GTAAGTTTTA...TTTTTCTTAATC/CATTTTCTGATT...TTTAG\|GAT	0	1	7.928
55681363	GC-AG	1.000000099473604e-05	330	rna-XM_023671603.1 10143843	3	18510264	18510593	Cucurbita pepo 3663	AAG\|GCAAGTATTT...CGATATTTAATA/AGGATATTGATT...TACAG\|ATT	2	1	10.963
55681364	GT-AG	1.000000099473604e-05	146	rna-XM_023671603.1 10143843	4	18510790	18510935	Cucurbita pepo 3663	AAT\|GTAGGAATTA...TTGGCTTTATTG/TTTATTGTCACT...TTCAG\|GTC	0	1	16.091
55681365	GT-AG	5.622672031930863e-05	92	rna-XM_023671603.1 10143843	5	18511227	18511318	Cucurbita pepo 3663	AAG\|GTTTGTACTC...CCTTCCTTATCA/GTTTTTTTTACC...TTCAG\|AAT	0	1	23.705
55681366	GT-AG	1.000000099473604e-05	91	rna-XM_023671603.1 10143843	6	18511415	18511505	Cucurbita pepo 3663	GGG\|GTACGAGTTA...GTTATTTTATTT/TTTTATTTAATT...TGTAG\|GCT	0	1	26.217
55681367	GT-AG	1.000000099473604e-05	433	rna-XM_023671603.1 10143843	7	18512226	18512658	Cucurbita pepo 3663	GAG\|GTGTGTGGTT...ACCACCCCAACT/GCAATATTTACG...GTTAG\|GAT	0	1	45.055
55681368	GT-AG	1.000000099473604e-05	795	rna-XM_023671603.1 10143843	8	18513321	18514115	Cucurbita pepo 3663	CAG\|GTCAGTTTGA...AATGTTTTAGAC/TGGTGACTAATG...TGCAG\|CAT	2	1	62.376

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);