WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 10082951

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
55389195	GT-AG	1.000000099473604e-05	223	rna-XM_023120308.1 10082951	2	1077069	1077291	Cucurbita maxima 3661	AAG\|GTCAGTACTT...ATACTCTTGGTT/ATGTTACTGATT...AACAG\|GTC	0	1	52.483
55389196	GT-AG	3.513413855242021e-05	92	rna-XM_023120308.1 10082951	3	1077519	1077610	Cucurbita maxima 3661	TGG\|GTAATGTTAA...GATACTTTAGCA/TATACTCTGATC...GGCAG\|AGT	2	1	59.617
55389197	GT-AG	0.0010734953536964	212	rna-XM_023120308.1 10082951	4	1077944	1078155	Cucurbita maxima 3661	CAG\|GTATGATCCC...TTTGCCTTATTG/GTTTGCCTTATT...AACAG\|CTC	2	1	70.082
55389198	GT-AG	3.4985242077056715	1147	rna-XM_023120308.1 10082951	5	1078403	1079549	Cucurbita maxima 3661	CAG\|GTATCCAACA...GGTTTCTTGAAT/GGTTTCTTGAAT...GGCAG\|ATG	0	1	77.844
55389199	GT-AG	1.000000099473604e-05	409	rna-XM_023120308.1 10082951	6	1079679	1080087	Cucurbita maxima 3661	CAG\|GTTAGTGCAT...AATATCTTATTT/TAATATCTTATT...TGCAG\|ATA	0	1	81.898
55389200	GT-AG	1.000000099473604e-05	191	rna-XM_023120308.1 10082951	7	1080304	1080494	Cucurbita maxima 3661	AAG\|GTTAGCATCA...ATCTTTCTATTC/TTTCTATTCAGC...GCCAG\|GTA	0	1	88.686
55389201	GT-AG	0.0277022056699683	148	rna-XM_023120308.1 10082951	8	1080619	1080766	Cucurbita maxima 3661	CAA\|GTATGTAGTT...TTTTTCTTAATC/TTTTTCTTAATC...TGAAG\|ATG	1	1	92.583
55396152	GT-AG	0.0054493096227806	69	rna-XM_023120308.1 10082951	1	1075328	1075396	Cucurbita maxima 3661	TCG\|GTATGTTAAA...TTTTTTTTACTA/TTTTTTTTTACT...TATAG\|AAT		0	3.646

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);