WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 10082949

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
55389156	GT-AG	1.000000099473604e-05	207	rna-XM_023121413.1 10082949	2	6098505	6098711	Cucurbita maxima 3661	CAG\|GTTTGTACTT...ATACTCCTAGTA/CTGTTACTGACC...AACAG\|GTT	0	1	52.552
55389157	GT-AG	1.000000099473604e-05	93	rna-XM_023121413.1 10082949	3	6098939	6099031	Cucurbita maxima 3661	TGG\|GTTCGATAAA...GATACTTTAGCA/TATACTCTGATC...TGCAG\|AGT	2	1	59.662
55389158	GT-AG	1.000000099473604e-05	365	rna-XM_023121413.1 10082949	4	6099365	6099729	Cucurbita maxima 3661	CAG\|GTAAAGTTGA...TTTTTCTTGTCC/GTTGCTCTTACA...AACAG\|CTC	2	1	70.091
55389159	GT-AG	9.699765362885824	828	rna-XM_023121413.1 10082949	5	6099977	6100804	Cucurbita maxima 3661	CAG\|GTATCCATCG...GGATTCTTGAAT/TAAATATTCATA...GGCAG\|ATG	0	1	77.826
55389160	GT-AG	1.000000099473604e-05	712	rna-XM_023121413.1 10082949	6	6100934	6101645	Cucurbita maxima 3661	CAG\|GTCAGTGCAC...ACGTCGTTAATA/ACGTCGTTAATA...TGCAG\|ATA	0	1	81.867
55389161	GT-AG	1.000000099473604e-05	230	rna-XM_023121413.1 10082949	7	6101862	6102091	Cucurbita maxima 3661	AAG\|GTTAGTATCC...GTTTTATTAATT/GTTTTATTAATT...TCCAG\|ATT	0	1	88.631
55389162	GT-AG	0.0019079296938728	158	rna-XM_023121413.1 10082949	8	6102216	6102373	Cucurbita maxima 3661	CAA\|GTATGTAATT...TCTCCCTTTTCT/TTTCTTTTGAGA...TCAAG\|ATG	1	1	92.515
55396151	GT-AG	0.0002224504209702	117	rna-XM_023121413.1 10082949	1	6096741	6096857	Cucurbita maxima 3661	TCG\|GTATGTGCAT...CGTTCTTTGTCT/CTCGATCTGATT...TGCAG\|ATG		0	3.883

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);