WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 10082943

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
55389092	GT-AG	1.000000099473604e-05	321	rna-XM_023150108.1 10082943	1	5979180	5979500	Cucurbita maxima 3661	CAG\|GTGAGGATGC...GTTGCCTTGTTT/TGTTGAGTTACT...GACAG\|GAT	0	1	20.076
55389093	GT-AG	0.0077619327836987	85	rna-XM_023150108.1 10082943	2	5977581	5977665	Cucurbita maxima 3661	CAG\|GTATTTTCCG...CTTCCCTGAATG/CTGTTACTAAAT...AACAG\|CTC	2	1	68.324
55389094	GT-AG	0.0031636359490729	149	rna-XM_023150108.1 10082943	3	5977290	5977438	Cucurbita maxima 3661	AAG\|GTATTGTTTT...AGTTTGTTAACG/TTGGATTTAATT...TTCAG\|TTT	0	1	72.849
55389095	GT-AG	1.000000099473604e-05	141	rna-XM_023150108.1 10082943	4	5977041	5977181	Cucurbita maxima 3661	AAG\|GTCTGTGTTG...GTTTTCTTTTCA/TTTCTTTTCACT...TTCAG\|GCA	0	1	76.291
55389096	GT-AG	1.000000099473604e-05	118	rna-XM_023150108.1 10082943	5	5976710	5976827	Cucurbita maxima 3661	CAG\|GTAAAGGAAA...AAAATCATATAA/GATAAAATCATA...CTCAG\|CGA	0	1	83.078
55389097	GT-AG	1.000000099473604e-05	84	rna-XM_023150108.1 10082943	6	5976515	5976598	Cucurbita maxima 3661	CAG\|GTTTGTCGCT...TTAACCTTGCTC/ACTGTACTAATT...TACAG\|CAT	0	1	86.616
55389098	GT-AG	1.650660586457628e-05	376	rna-XM_023150108.1 10082943	7	5975944	5976319	Cucurbita maxima 3661	CAG\|GTGTTTGTCG...CTTTCTTTACTC/ACTTTCTTTACT...TCCAG\|GTT	0	1	92.83
55389099	GT-AG	0.0001534225086016	274	rna-XM_023150108.1 10082943	8	5975495	5975768	Cucurbita maxima 3661	GAG\|GTATGATCTC...CATTTTTCAACG/CCATTTTTCAAC...GACAG\|AGA	1	1	98.407

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);