WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 10082938

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
55389026	GT-AG	1.000000099473604e-05	205	rna-XM_023139194.1 10082938	1	970161	970365	Cucurbita maxima 3661	CAG\|GTGATCACGC...CATGTTTTAATT/CATGTTTTAATT...GGCAG\|GAT	0	1	20.861
55389027	GT-AG	0.0013860286499191	89	rna-XM_023139194.1 10082938	2	968528	968616	Cucurbita maxima 3661	CAG\|GTATTTGCTG...ACTGTCTTGAAT/TTGAATTTGAAT...AACAG\|CTC	2	1	69.005
55389028	GT-AG	0.0071694675632278	99	rna-XM_023139194.1 10082938	3	968287	968385	Cucurbita maxima 3661	AAG\|GTATTGTTTT...TCGGTTTTAATG/GAGTTGTTTATT...TCCAG\|TTT	0	1	73.433
55389029	GT-AG	1.000000099473604e-05	180	rna-XM_023139194.1 10082938	4	967999	968178	Cucurbita maxima 3661	AAG\|GTCTGTGTTG...TACACTGTAACT/TTCATTTTTACA...TTCAG\|GCA	0	1	76.801
55389030	GT-AG	0.0003318787543946	98	rna-XM_023139194.1 10082938	5	967688	967785	Cucurbita maxima 3661	CAG\|GTATGGTTGT...CTTTCTATGATA/ATGATAATCATG...CCCAG\|AGA	0	1	83.442
55389031	GT-AG	2.5168704671202463e-05	101	rna-XM_023139194.1 10082938	6	967476	967576	Cucurbita maxima 3661	CAG\|GTTTGTTATT...AGCACGTTAATT/CGTTAATTTACT...TTCAG\|CAT	0	1	86.904
55389032	GT-AG	0.0007013824545612	511	rna-XM_023139194.1 10082938	7	966770	967280	Cucurbita maxima 3661	CAG\|GTGTTTTTCT...AAAATCTTAACG/ACGTGCTTTATT...TCCAG\|GTT	0	1	92.984
55389033	GT-AG	0.001882686970582	264	rna-XM_023139194.1 10082938	8	966331	966594	Cucurbita maxima 3661	GAG\|GTACATTCTC...ACGATCTTAAAT/CTTAAATTGAAT...GACAG\|AGA	1	1	98.441

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);