WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 10082934

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
55388954	GT-AG	0.0004828979499958	351	rna-XM_023139406.1 10082934	1	7392586	7392936	Cucurbita maxima 3661	CAG\|GTTTCAGTTT...TTTTTTTTTTCT/TTTCTGTTTATG...ATCAG\|AAT	1	1	7.137
55388955	GT-AG	5.765122019418039e-05	211	rna-XM_023139406.1 10082934	2	7392331	7392541	Cucurbita maxima 3661	ACG\|GTAAGTTTTC...AATTTCTTATGG/ATCAGTCTAATT...CAAAG\|GAT	0	1	8.322
55388956	GT-AG	0.0001082133368188	144	rna-XM_023139406.1 10082934	3	7392074	7392217	Cucurbita maxima 3661	CAG\|GTAAGTTTTG...GGCTCCTTAAAG/CTTGGGATAATT...TGCAG\|GTC	2	1	11.365
55388957	GT-AG	0.0001025071388266	128	rna-XM_023139406.1 10082934	4	7391756	7391883	Cucurbita maxima 3661	AGT\|GTACGGGTCT...CTTTTTTTGATA/CTTTTTTTGATA...TTCAG\|GTC	0	1	16.483
55388958	GT-AG	3.946459836509099e-05	221	rna-XM_023139406.1 10082934	5	7391343	7391563	Cucurbita maxima 3661	CAG\|GTACTTGTGG...ATCATCTTACTG/AATCATCTTACT...TGCAG\|GGT	0	1	21.654
55388959	GT-AG	1.000000099473604e-05	402	rna-XM_023139406.1 10082934	6	7390179	7390580	Cucurbita maxima 3661	AAG\|GTTCGTAATC...GAACTTTTAACC/ACCAGTCTCACT...AATAG\|GAT	0	1	42.176
55388960	GT-AG	1.000000099473604e-05	519	rna-XM_023139406.1 10082934	7	7389091	7389609	Cucurbita maxima 3661	GGG\|GTCAGTATAT...CAAATTTTGTTT/TGAAAACTGATA...ACCAG\|GAC	2	1	57.501
55396134	GT-AG	5.9242374763718606e-05	300	rna-XM_023139406.1 10082934	8	7387483	7387782	Cucurbita maxima 3661	CAG\|GTACGTACGC...ATTCTCTTATTA/GATTTTCTCAAT...CCTAG\|ATT		0	92.728

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);