WtMTA: introns: 7 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 10082926

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
55388876	GT-AG	1.000000099473604e-05	790	rna-XM_023132069.1 10082926	2	5333370	5334159	Cucurbita maxima 3661	CAG\|GTTCGTCAAT...ACTGTCTTAATG/ACTGTCTTAATG...TTCAG\|GTC	1	1	4.426
55388877	GT-AG	1.000000099473604e-05	1261	rna-XM_023132069.1 10082926	3	5331663	5332923	Cucurbita maxima 3661	GAG\|GTTAGTGCTG...CATATTTTAAAC/CATATTTTAAAC...TACAG\|GTA	0	1	17.162
55388878	GT-AG	1.000000099473604e-05	750	rna-XM_023132069.1 10082926	4	5330730	5331479	Cucurbita maxima 3661	AAG\|GTTATGCTCA...ATGGTTTTAACT/CTGATTTTGACT...TGTAG\|GCT	0	1	22.387
55388879	GT-AG	0.0094530123504139	99	rna-XM_023132069.1 10082926	5	5330523	5330621	Cucurbita maxima 3661	CAG\|GTAACTATTC...ATTATCTTAATA/ATTATCTTAATA...CGCAG\|GTG	0	1	25.471
55388880	GT-AG	1.000000099473604e-05	81	rna-XM_023132069.1 10082926	6	5330238	5330318	Cucurbita maxima 3661	AAG\|GTCATTCCTG...TAAGTTTTGATC/TAAGTTTTGATC...TGCAG\|ATT	0	1	31.296
55388881	GT-AG	0.0064392624431781	79	rna-XM_023132069.1 10082926	7	5328303	5328381	Cucurbita maxima 3661	AAG\|GTATACCCAG...TTTCTTTTACCT/TTTTCTTTTACC...TTCAG\|GCC	2	1	84.295
55396130	GT-AG	0.0002386115777762	126	rna-XM_023132069.1 10082926	1	5334398	5334523	Cucurbita maxima 3661	AAG\|GTCGCTACTT...TCTGCCTTATCA/TTCTGCCTTATC...TGTAG\|TTC		0	2.256

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);