WtMTA: introns: 9 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

9 rows where transcript_id = 10082895

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
55388505	GT-AG	0.0001226879107621	93	rna-XM_023141403.1 10082895	1	9142004	9142096	Cucurbita maxima 3661	CGG\|GTACTGTTCT...GTTTCTCTAATT/GTTTCTCTAATT...ATTAG\|GAG	1	1	19.097
55388506	GT-AG	1.000000099473604e-05	77	rna-XM_023141403.1 10082895	2	9143527	9143603	Cucurbita maxima 3661	AAG\|GTGAGCATCA...GAAACTTTAATG/AAGATTCTTACA...TGCAG\|AGA	0	1	52.039
55388507	GT-AG	1.000000099473604e-05	684	rna-XM_023141403.1 10082895	3	9143691	9144374	Cucurbita maxima 3661	CTG\|GTAAGTACTC...AATGCTTTTGCT/CTAACACTAACC...TTCAG\|GTA	0	1	54.043
55388508	GT-AG	1.000000099473604e-05	100	rna-XM_023141403.1 10082895	4	9144975	9145074	Cucurbita maxima 3661	AGG\|GTAATAACCT...TTCTTCTTCTCT/TTTTGCATTACG...TGCAG\|TCA	0	1	67.865
55388509	GC-AG	1.000000099473604e-05	139	rna-XM_023141403.1 10082895	5	9145240	9145378	Cucurbita maxima 3661	CAG\|GCGAGAACAT...TAATCCTTAGCT/ATGTTTTTTATT...TACAG\|GGA	0	1	71.666
55388510	GT-AG	0.0008035684479252	79	rna-XM_023141403.1 10082895	6	9145674	9145752	Cucurbita maxima 3661	CTA\|GTAAGCTTAT...TTTCATTTGATC/ATAACTTTCATT...TACAG\|GCT	1	1	78.461
55388511	GT-AG	1.000000099473604e-05	78	rna-XM_023141403.1 10082895	7	9146274	9146351	Cucurbita maxima 3661	GAG\|GTGAGCTTGG...ACGGTCTTAACT/TTAACACTAACT...TTCAG\|GTC	0	1	90.463
55388512	GT-AG	1.000000099473604e-05	78	rna-XM_023141403.1 10082895	8	9146416	9146493	Cucurbita maxima 3661	CAG\|GTACGATGAG...GTGTTCTTGTTC/GTTTGGTTTATT...TGCAG\|TTG	1	1	91.937
55388513	GC-AG	1.000000099473604e-05	83	rna-XM_023141403.1 10082895	9	9146734	9146816	Cucurbita maxima 3661	AAG\|GCAAGCCAAC...ATCATTCTAATG/ATCATTCTAATG...TATAG\|GCA	1	1	97.466

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);