WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 10029668

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
55135961	GT-AG	1.000000099473604e-05	113	rna-XM_011661650.2 10029668	1	25166656	25166768	Cucumis sativus 3659	AAG\|GTAATATATA...TCTCTTTTGATC/CTAATTCTTATA...AACAG\|TGC	0	1	6.575
55135962	GT-AG	0.0004740111520286	194	rna-XM_011661650.2 10029668	2	25166407	25166600	Cucumis sativus 3659	TGG\|GTAACTATAT...ACATTCTAAAAA/TAATGATTGATT...TACAG\|AAG	1	1	8.063
55135963	GT-AG	4.420364823030437e-05	689	rna-XM_011661650.2 10029668	3	25165539	25166227	Cucumis sativus 3659	AAG\|GTACCGAGAC...AATGATTTAATA/AATGATTTAATA...TTTAG\|GTC	0	1	12.906
55135964	GT-AG	0.1203301372211672	1132	rna-XM_011661650.2 10029668	4	25163949	25165080	Cucumis sativus 3659	CTT\|GTATGTCTAC...TTATTCTTAATG/TTATTCTTAATG...TGTAG\|GTC	2	1	25.298
55135965	GT-AG	1.000000099473604e-05	575	rna-XM_011661650.2 10029668	5	25162833	25163407	Cucumis sativus 3659	AAG\|GTTTGTTATT...TGTTGTTTTGCG/GGATGATTTATG...AATAG\|GTT	0	1	39.935
55135966	GT-AG	1.000000099473604e-05	670	rna-XM_011661650.2 10029668	6	25161983	25162652	Cucumis sativus 3659	CTG\|GTGAGGCTAA...TGTTTTTTGATT/TGTTTTTTGATT...ATCAG\|GTA	0	1	44.805
55135967	GT-AG	1.000000099473604e-05	89	rna-XM_011661650.2 10029668	7	25160619	25160707	Cucumis sativus 3659	AAG\|GTAAGCAAAC...CTTGTCATAACT/TATTGTTTGAAT...TATAG\|GAT	0	1	79.302
55135968	GT-AG	2.5753500114634224e-05	1027	rna-XM_011661650.2 10029668	8	25159185	25160211	Cucumis sativus 3659	CTC\|GTAAGTCTTC...TATTTATTATAT/AGTCTATTTATT...TGTAG\|GTC	2	1	90.314

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);