WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 10029656

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
55135803	GT-AG	0.0006007881015329	92	rna-XM_004145078.3 10029656	2	6332709	6332800	Cucumis sativus 3659	GTG\|GTATTTGTCA...TTTCCCATATAT/TTTCCTCTCACT...TTTAG\|GAT	0	1	76.482
55135804	GT-AG	1.000000099473604e-05	1029	rna-XM_004145078.3 10029656	3	6332882	6333910	Cucumis sativus 3659	CAG\|GTACAAATCT...AAATTGTTGACT/AAATTGTTGACT...GGCAG\|ATT	0	1	78.492
55135805	GT-AG	1.000000099473604e-05	402	rna-XM_004145078.3 10029656	4	6334064	6334465	Cucumis sativus 3659	TTG\|GTGAGTTAAA...GTTTCTCTAATT/GTTTCTCTAATT...TTCAG\|ACG	0	1	82.287
55135806	GT-AG	0.1265282192468936	95	rna-XM_004145078.3 10029656	5	6334630	6334724	Cucumis sativus 3659	ACG\|GTATTCTCTT...TTGTTCTCATTT/TTTGTTCTCATT...TCCAG\|GTA	2	1	86.356
55135807	GT-AG	0.0001010011102352	104	rna-XM_004145078.3 10029656	6	6334873	6334976	Cucumis sativus 3659	AAG\|GTATTTGATA...AGTTTTTTCACC/AGTTTTTTCACC...TAAAG\|GTT	0	1	90.027
55135808	GT-AG	1.000000099473604e-05	2444	rna-XM_004145078.3 10029656	7	6335100	6337543	Cucumis sativus 3659	AAG\|GTAAGATACC...TAGTTCTGAGTT/GTAGTTCTGAGT...GGCAG\|GTT	0	1	93.079
55135809	GT-AG	1.000000099473604e-05	299	rna-XM_004145078.3 10029656	8	6337632	6337930	Cucumis sativus 3659	TAG\|GTGTGAAAAA...ATTTCCTTCTTT/TTTCATCTCACA...TTCAG\|GAG	1	1	95.262
55149029	GT-AG	1.000000099473604e-05	1315	rna-XM_004145078.3 10029656	1	6328296	6329610	Cucumis sativus 3659	CAG\|GTAAGTTCTC...TAACTTTTGAAT/CTTTTTCTAACT...CCCAG\|GTT		0	3.845

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);