WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 10029636

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
55135427	GT-AG	1.000000099473604e-05	1609	rna-XM_004146646.3 10029636	1	15680750	15682358	Cucumis sativus 3659	AAG\|GTCAGTGTAT...ATATTCTTGGTG/TTGTTTCTGATA...TGTAG\|TAT	0	1	22.214
55135428	GT-AG	1.000000099473604e-05	645	rna-XM_004146646.3 10029636	2	15679851	15680495	Cucumis sativus 3659	CAA\|GTAATACTTG...TATGTTTTGATC/TATGTTTTGATC...TTCAG\|GAC	2	1	28.262
55135429	GT-AG	0.0001440101640138	286	rna-XM_004146646.3 10029636	3	15679438	15679723	Cucumis sativus 3659	CTG\|GTAAACACTT...TGGCTTTTAACA/TTTTCTTTTATG...TACAG\|GAA	0	1	31.286
55135430	GT-AG	0.0011247811542856	121	rna-XM_004146646.3 10029636	4	15679248	15679368	Cucumis sativus 3659	CAG\|GTATGTTAAA...TGTCTTTTAATC/TGTCTTTTAATC...TTCAG\|GGC	0	1	32.929
55135431	GT-AG	0.0133169551760185	11637	rna-XM_004146646.3 10029636	5	15667473	15679109	Cucumis sativus 3659	CTG\|GTATTTACTA...TTTGTTTTAACA/TTTGTTTTAACA...CTCAG\|CCT	0	1	36.214
55135432	GT-AG	0.0305263453370758	109	rna-XM_004146646.3 10029636	6	15667262	15667370	Cucumis sativus 3659	GAG\|GTATTTTATT...GTAACTTTAGCC/AAAAAAGTAACT...TATAG\|ATT	0	1	38.643
55135433	GT-AG	1.000000099473604e-05	855	rna-XM_004146646.3 10029636	7	15666060	15666914	Cucumis sativus 3659	AAG\|GTAGGAATCC...AATTTCTTTTCT/GACAATCTGATT...TACAG\|GCG	2	1	46.905
55135434	GT-AG	0.0328617113068703	463	rna-XM_004146646.3 10029636	8	15663922	15664384	Cucumis sativus 3659	ATG\|GTATGTTTCA...TTTTTTTTATTC/ATTTTTTTTATT...TCTAG\|GTC	0	1	86.786

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);