WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 10029633

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
55135369	GT-AG	0.016570031479991	1304	rna-XM_011659447.2 10029633	1	20402814	20404117	Cucumis sativus 3659	TGA\|GTATGTTTCT...AACATTTAAGCT/TTTAAGCTGACT...TGTAG\|GTT	2	1	3.605
55135370	GT-AG	0.0001549330485895	900	rna-XM_011659447.2 10029633	2	20404282	20405181	Cucumis sativus 3659	CTG\|GTATGACTCA...AAAATTTTGACA/AAAATTTTGACA...TGCAG\|GTT	1	1	7.42
55135371	GT-AG	0.0003271559121393	89	rna-XM_011659447.2 10029633	3	20405306	20405394	Cucumis sativus 3659	TAA\|GTATGACCTT...CTGTTCTTTTCG/TCCTTGCTGAAA...TCCAG\|ATT	2	1	10.305
55135372	GT-AG	1.000000099473604e-05	256	rna-XM_011659447.2 10029633	4	20405525	20405780	Cucumis sativus 3659	AAG\|GTGCGCAGTG...TTTGCTTTAGTC/AATATATTAATA...CACAG\|AGA	0	1	13.329
55135373	GT-AG	0.0008363322057263	73	rna-XM_011659447.2 10029633	5	20405849	20405921	Cucumis sativus 3659	CAG\|GTATTACTGA...TCTTCTTTAGTT/CTTTAGTTGAAT...TGCAG\|TTT	2	1	14.91
55135374	GT-AG	1.000000099473604e-05	127	rna-XM_011659447.2 10029633	6	20409316	20409442	Cucumis sativus 3659	AAG\|GTAAATAGTA...CATTTATTATTG/TGTACATTTATT...TGTAG\|AAG	0	1	93.859
55135375	GT-AG	0.0006470823781006	547	rna-XM_011659447.2 10029633	7	20409548	20410094	Cucumis sativus 3659	AAA\|GTAAGCTACT...TTGTTATTAACT/TTGTTATTAACT...TCCAG\|TCC	0	1	96.301
55135376	GT-AG	2.218182213668593e-05	80	rna-XM_011659447.2 10029633	8	20410203	20410282	Cucumis sativus 3659	CAG\|GTTCTCATTT...TGCACCATATCA/CTCGTTGTAACT...CTCAG\|GCT	0	1	98.814

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);