WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 10007596

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
55033759	GT-AG	0.0003461527957671	314	rna-XM_008442338.2 10007596	2	3334734	3335047	Cucumis melo 3656	AAG\|GTACCAACTG...AAGATTTTACAT/CATTCATTCATC...TCCAG\|AAA	0	1	23.129
55033760	GT-AG	1.108588143167714e-05	509	rna-XM_008442338.2 10007596	3	3333999	3334507	Cucumis melo 3656	AAG\|GTAAGCCTGT...TTTACTTTAAGT/GTTACATTTACT...TGTAG\|GTG	1	1	30.851
55033761	GT-AG	0.005078383904487	1450	rna-XM_008442338.2 10007596	4	3332303	3333752	Cucumis melo 3656	CAG\|GTATTATTTC...ACGACCTTACTA/GTATTGCTTATG...AACAG\|TTT	1	1	39.255
55033762	GT-AG	0.0002070000782061	117	rna-XM_008442338.2 10007596	5	3332135	3332251	Cucumis melo 3656	GTG\|GTATTGAGCT...AAAATTTTATCT/AAGTTATTTATT...TGCAG\|ATG	1	1	40.998
55033763	GT-AG	0.0521587795523383	107	rna-XM_008442338.2 10007596	6	3331767	3331873	Cucumis melo 3656	CAG\|GTATTTTTTT...CATTTTTTATTT/TTTATTTTCATT...TTCAG\|GCA	1	1	49.915
55033764	GT-AG	0.0013625961391468	861	rna-XM_008442338.2 10007596	7	3330738	3331598	Cucumis melo 3656	CAG\|GTTCTCTTTC...ACATTCTTGAAA/GACATGCTGATA...TGCAG\|AAT	1	1	55.654
55033765	GT-AG	1.000000099473604e-05	643	rna-XM_008442338.2 10007596	8	3329840	3330482	Cucumis melo 3656	ATG\|GTAAGTGGCT...TAACTGTTAATG/CTTCATCTAACG...AACAG\|GGA	1	1	64.366
55036616	GT-AG	0.0002634774680579	133	rna-XM_008442338.2 10007596	1	3335536	3335668	Cucumis melo 3656	TAA\|GTACGAATTA...TTTGCTTTATCT/TTTTGCTTTATC...TGTAG\|GTG		0	18.825

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);