WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 10007569

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
55033539	GT-AG	0.0006138078236548	570	rna-XM_008444039.2 10007569	1	4477013	4477582	Cucumis melo 3656	GAG\|GTTTGTTCTA...AAGCCTTTGACT/AAGCCTTTGACT...TGTAG\|ACA	0	1	2.461
55033540	GT-AG	0.0997244104206982	261	rna-XM_008444039.2 10007569	2	4477778	4478038	Cucumis melo 3656	GAG\|GTAACTTTTC...AATATCTTGATT/AATATCTTGATT...TGCAG\|CTG	0	1	9.732
55033541	GT-AG	0.0022866834109926	84	rna-XM_008444039.2 10007569	3	4478135	4478218	Cucumis melo 3656	CAG\|GTATGTCTTG...TGTTTTTTAGAA/ATGTTTTTTAGA...ATCAG\|AGT	0	1	13.311
55033542	GT-AG	1.000000099473604e-05	80	rna-XM_008444039.2 10007569	4	4478346	4478425	Cucumis melo 3656	TTG\|GTCAGTTTTC...AGATTCATAATT/ATCAGATTCATA...TGTAG\|TTG	1	1	18.046
55033543	GT-AG	1.1469402499820725e-05	125	rna-XM_008444039.2 10007569	5	4479933	4480057	Cucumis melo 3656	AAG\|GTATGAGCTT...TGTTTCTTTTCT/ACCATACACATA...TTCAG\|ATC	2	1	74.236
55033544	GT-AG	1.000000099473604e-05	93	rna-XM_008444039.2 10007569	6	4480224	4480316	Cucumis melo 3656	CAG\|GTTTGTACAA...ATTTTCTCAATA/CATTTTCTCAAT...TGAAG\|GTA	0	1	80.425
55033545	GT-AG	0.0001316124712769	128	rna-XM_008444039.2 10007569	7	4480482	4480609	Cucumis melo 3656	AAG\|GTAGTTTTGA...TTGCTTTTGTCT/TCGTATATGAAC...AACAG\|ATC	0	1	86.577
55033546	GT-AG	1.000000099473604e-05	276	rna-XM_008444039.2 10007569	8	4480763	4481038	Cucumis melo 3656	AAG\|GTGGTCTCCC...TCAATTTTATCC/TTCAATTTTATC...TGTAG\|GAA	0	1	92.282

Advanced export

JSON shape: default, array, newline-delimited, object

CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);