WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 10007522

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
55032993	GT-AG	0.0006510533542021	92	rna-XM_008442179.2 10007522	2	3315899	3315990	Cucumis melo 3656	GTG\|GTATTTGTCA...TTTCTCATATTT/TTGTTTCTCATA...TTTAG\|GAT	0	1	76.353
55032994	GT-AG	1.000000099473604e-05	941	rna-XM_008442179.2 10007522	3	3316072	3317012	Cucumis melo 3656	CAG\|GTACAAATCA...AAATTGTTGACC/AAATTGTTGACC...GGCAG\|ATA	0	1	78.374
55032995	GT-AG	1.000000099473604e-05	403	rna-XM_008442179.2 10007522	4	3317166	3317568	Cucumis melo 3656	TTG\|GTGAGTTAAA...TGTTCTCTAATT/TGTTCTCTAATT...TTCAG\|ACG	0	1	82.19
55032996	GT-AG	0.1265282192468936	95	rna-XM_008442179.2 10007522	5	3317733	3317827	Cucumis melo 3656	ACG\|GTATTCTCTT...TTGTTCTCATTT/TTTGTTCTCATT...TCCAG\|GTA	2	1	86.281
55032997	GT-AG	0.0001010011102352	104	rna-XM_008442179.2 10007522	6	3317976	3318079	Cucumis melo 3656	AAG\|GTATTTGATA...AGTTTTTTCACC/AGTTTTTTCACC...TAAAG\|GTT	0	1	89.973
55032998	GT-AG	1.000000099473604e-05	2555	rna-XM_008442179.2 10007522	7	3318203	3320757	Cucumis melo 3656	AAG\|GTAAGATACC...GATTTCTTGCTT/GTAGTTCTGATT...GGCAG\|GTT	0	1	93.041
55032999	GT-AG	1.000000099473604e-05	287	rna-XM_008442179.2 10007522	8	3320846	3321132	Cucumis melo 3656	TAG\|GTGTGAAAAA...ATTTCCTTCTTC/TTTCATCTCAAA...TTCAG\|GAG	1	1	95.236
55036589	GT-AG	1.000000099473604e-05	1323	rna-XM_008442179.2 10007522	1	3311456	3312778	Cucumis melo 3656	CAG\|GTAAGTTCTC...CTTTTTCTAACT/CTTTTTCTAACT...CCCAG\|GTT		0	2.794

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);