WtMTA: genomes: 2 rows where phylum = "Porifera" sorted by percent_minor

Data license: ODbL · Data source: Larue & Roy, 2023

taxonomy_id: INTEGER (primary key), unique identifier for each species
species: TEXT, binomial name of the species
family: TEXT, taxonomic family of the species
order: TEXT, taxonomic order of the species
phylum: TEXT, taxonomic phylum of the species
accession: TEXT, accession number of the genome assembly
n_minor_introns: INTEGER, total number of minor introns in the genome
n_major_introns: INTEGER, total number of major introns in the genome
percent_minor_introns: REAL, percentage of minor introns in the genome
busco_score: REAL, BUSCO score assessing the genome assembly completeness (vs. eukaryota_odb10)
minor_snRNAs: TEXT, minor snRNAs found in the annotated transcriptome
genome_version: TEXT, version of the genome assembly
source_url: TEXT, URL for the source genome/annotation files
source_metadata: TEXT, additional metadata from the original data source
minor_intron+: INTEGER, indicates if the species is inferred to contain real minor introns (1) or not (0)

2 rows where phylum = "Porifera" sorted by percent_minor_introns descending

Search:

descending

taxonomy_id	species	family	order	phylum	accession	n_minor_introns	n_major_introns	percent_minor_introns ▲	busco_score	minor_snRNAs	genome_version	source_url	source_metadata	minor_intron+
400682	Amphimedon queenslandica	Niphatidae	Haplosclerida	Porifera	GCF_000090795.1	263	149226	0.1759326773207393	94.5	["u11", "u12", "u4atac", "u6atac"]	v1.0	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/090/795/GCF_000090795.1_v1.0	GCF_000090795.1;PRJNA66531;SAMN02743868;ACUQ00000000.1;representative genome;400682;400682;Amphimedon queenslandica;;;latest;Scaffold;Major;Full;2010/05/28;v1.0;US DOE Joint Genome Institute (JGI-PGF);GCA_000090795.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/090/795/GCF_000090795.1_v1.0;;;na	1
6052	Ephydatia muelleri	Spongillidae	Spongillida	Porifera	GCA_013339895.1	303	212652	0.1422835810382475	79.6	["u11", "u12", "u4atac", "u6atac"]	Emu_genome_v1	ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/339/895/GCA_013339895.1_Emu_genome_v1	GCA_013339895.1;PRJNA579531;SAMN13939706;JABACO000000000.1;representative genome;6052;6052;Ephydatia muelleri;;;latest;Scaffold;Major;Full;2020/06/12;Emu_genome_v1;Natural History Museum, London;na;na;ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/339/895/GCA_013339895.1_Emu_genome_v1;;;na	1

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CREATE TABLE "genomes" (
"taxonomy_id" INTEGER,
  "species" TEXT,
  "family" TEXT,
  "order" TEXT,
  "phylum" TEXT,
  "accession" TEXT,
  "n_minor_introns" INTEGER,
  "n_major_introns" INTEGER,
  "percent_minor_introns" REAL,
  "busco_score" REAL,
  "minor_snRNAs" TEXT,
  "genome_version" TEXT,
  "source_url" TEXT,
  "source_metadata" TEXT,
  "minor_intron+" INTEGER
  ,PRIMARY KEY ([taxonomy_id])
);
CREATE INDEX [idx_genomes_phylum]
    ON [genomes] ([phylum]);
CREATE INDEX [idx_genomes_order]
    ON [genomes] ([order]);
CREATE INDEX [idx_genomes_family]
    ON [genomes] ([family]);