genomes

Data license: ODbL · Data source: Larue & Roy, 2023

taxonomy_id
INTEGER (primary key), unique identifier for each species
species
TEXT, binomial name of the species
family
TEXT, taxonomic family of the species
order
TEXT, taxonomic order of the species
phylum
TEXT, taxonomic phylum of the species
accession
TEXT, accession number of the genome assembly
n_minor_introns
INTEGER, total number of minor introns in the genome
n_major_introns
INTEGER, total number of major introns in the genome
percent_minor_introns
REAL, percentage of minor introns in the genome
busco_score
REAL, BUSCO score assessing the genome assembly completeness (vs. eukaryota_odb10)
minor_snRNAs
TEXT, minor snRNAs found in the annotated transcriptome
genome_version
TEXT, version of the genome assembly
source_url
TEXT, URL for the source genome/annotation files
source_metadata
TEXT, additional metadata from the original data source
minor_intron+
INTEGER, indicates if the species is inferred to contain real minor introns (1) or not (0)

760 rows where phylum = "Chordata" sorted by percent_minor_introns descending

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Suggested facets: minor_snRNAs, minor_snRNAs (array)

taxonomy_id species family order phylum accession n_minor_introns n_major_introns percent_minor_introns ▲ busco_score minor_snRNAs genome_version source_url source_metadata minor_intron+
9915 Bos indicus Bovidae Artiodactyla Chordata GCF_000247795.1 688 171989 0.398431754084215 93.7 ["u11", "u12", "u4atac", "u6atac"] Bos_indicus_1.0 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/247/795/GCF_000247795.1_Bos_indicus_1.0 GCF_000247795.1;PRJNA360096;SAMN02953802;AGFL00000000.1;representative genome;9915;9915;Bos indicus;breed=Nelore;QUIL7308;latest;Chromosome;Major;Full;2014/11/25;Bos_indicus_1.0;Genoa Biotecnologia SA ;GCA_000247795.2;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/247/795/GCF_000247795.1_Bos_indicus_1.0;;;na 1
187382 Chlamydotis macqueenii Otididae Gruiformes Chordata GCF_000695195.1 433 112937 0.381935256240628 60.0 ["u12", "u6atac"] ASM69519v1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/695/195/GCF_000695195.1_ASM69519v1 GCF_000695195.1;PRJNA266006;SAMN02324157;JMFJ00000000.1;representative genome;187382;187382;Chlamydotis macqueenii;;BGI_N324;latest;Scaffold;Major;Full;2014/06/02;ASM69519v1;BGI;GCA_000695195.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/695/195/GCF_000695195.1_ASM69519v1;;;na 1
36300 Pelecanus crispus Pelecanidae Pelecaniformes Chordata GCF_000687375.1 436 114858 0.3781636511873991 59.2 ["u11", "u6atac"] ASM68737v1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/687/375/GCF_000687375.1_ASM68737v1 GCF_000687375.1;PRJNA253833;SAMN02339887;JJRG00000000.1;representative genome;36300;36300;Pelecanus crispus;;BGI_N334;latest;Scaffold;Major;Full;2014/05/09;ASM68737v1;BGI;GCA_000687375.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/687/375/GCF_000687375.1_ASM68737v1;;;na 1
925459 Balearica regulorum Gruidae Gruiformes Chordata GCF_000709895.1 450 118975 0.376805526481055 60.8 ["u12", "u6atac"] ASM70989v1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/709/895/GCF_000709895.1_ASM70989v1 GCF_000709895.1;PRJNA264996;SAMN02318095;JJRR00000000.1;representative genome;100784;925459;Balearica regulorum gibbericeps;;BGI_N312;latest;Scaffold;Major;Full;2014/06/25;ASM70989v1;BGI;GCA_000709895.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/709/895/GCF_000709895.1_ASM70989v1;;;na 1
37040 Gavia stellata Gaviidae Gaviiformes Chordata GCF_000690875.1 420 112258 0.3727435701734145 61.6 ["u12", "u6atac"] ASM69087v1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/690/875/GCF_000690875.1_ASM69087v1 GCF_000690875.1;PRJNA261843;SAMN02324832;JJRM00000000.1;representative genome;37040;37040;Gavia stellata;;BGI_N328;latest;Scaffold;Major;Full;2014/05/13;ASM69087v1;BGI;GCA_000690875.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/690/875/GCF_000690875.1_ASM69087v1;;;na 1
57397 Apaloderma vittatum Trogonidae Trogoniformes Chordata GCF_000703405.1 423 113269 0.3720578404813003 55.7 ["u12", "u4atac", "u6atac"] ASM70340v1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/703/405/GCF_000703405.1_ASM70340v1 GCF_000703405.1;PRJNA263608;SAMN02318033;JMFV00000000.1;representative genome;57397;57397;Apaloderma vittatum;;BGI_N311;latest;Scaffold;Major;Full;2014/06/16;ASM70340v1;BGI;GCA_000703405.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/703/405/GCF_000703405.1_ASM70340v1;;;na 1
57421 Merops nubicus Meropidae Coraciiformes Chordata GCF_000691845.1 408 109553 0.3710406416820509 56.1 ["u12", "u6atac"] ASM69184v1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/691/845/GCF_000691845.1_ASM69184v1 GCF_000691845.1;PRJNA253837;SAMN02338310;JJRJ00000000.1;representative genome;57421;57421;Merops nubicus;;BGI_N331;latest;Scaffold;Major;Full;2014/05/16;ASM69184v1;BGI;GCA_000691845.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/691/845/GCF_000691845.1_ASM69184v1;;;na 1
57412 Colius striatus Coliidae Coliiformes Chordata GCF_000690715.1 408 109695 0.37056211002425 60.0 ["u12", "u6atac"] ASM69071v1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/690/715/GCF_000690715.1_ASM69071v1 GCF_000690715.1;PRJNA265879;SAMN02324230;JJRP00000000.1;representative genome;57412;57412;Colius striatus;;BGI_N325;latest;Scaffold;Major;Full;2014/05/13;ASM69071v1;BGI;GCA_000690715.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/690/715/GCF_000690715.1_ASM69071v1;;;na 1
121530 Tauraco erythrolophus Musophagidae Musophagiformes Chordata GCF_000709365.1 438 117995 0.3698293549939628 62.7 ["u12", "u6atac"] ASM70936v1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/709/365/GCF_000709365.1_ASM70936v1 GCF_000709365.1;PRJNA265115;SAMN02339893;JNOY00000000.1;representative genome;121530;121530;Tauraco erythrolophus;;BGI_N340;latest;Scaffold;Major;Full;2014/06/25;ASM70936v1;BGI;GCA_000709365.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/709/365/GCF_000709365.1_ASM70936v1;;;na 1
57068 Acanthisitta chloris Acanthisittidae Passeriformes Chordata GCF_000695815.1 446 120410 0.3690342225458397 60.4 ["u11", "u12", "u6atac"] ASM69581v1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/695/815/GCF_000695815.1_ASM69581v1 GCF_000695815.1;PRJNA253841;SAMN02318032;JJRS00000000.1;representative genome;57068;57068;Acanthisitta chloris;;BGI_N310;latest;Scaffold;Major;Full;2014/05/27;ASM69581v1;BGI;GCA_000695815.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/695/815/GCF_000695815.1_ASM69581v1;;;na 1
97097 Phaethon lepturus Phaethontidae Pelecaniformes Chordata GCF_000687285.1 439 118622 0.3687185560343017 66.7 ["u12", "u6atac"] ASM68728v1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/687/285/GCF_000687285.1_ASM68728v1 GCF_000687285.1;PRJNA265998;SAMN02339888;JJRF00000000.1;representative genome;97097;97097;Phaethon lepturus;;BGI_N335;latest;Scaffold;Major;Full;2014/05/08;ASM68728v1;BGI;GCA_000687285.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/687/285/GCF_000687285.1_ASM68728v1;;;na 1
54380 Cariama cristata Cariamidae Cariamiformes Chordata GCF_000690535.1 435 118570 0.3655308600478971 61.6 ["u12", "u6atac"] ASM69053v1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/690/535/GCF_000690535.1_ASM69053v1 GCF_000690535.1;PRJNA263623;SAMN02318733;JJRQ00000000.1;representative genome;54380;54380;Cariama cristata;;BGI_N322;latest;Scaffold;Major;Full;2014/05/12;ASM69053v1;BGI;GCA_000690535.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/690/535/GCF_000690535.1_ASM69053v1;;;na 1
279965 Antrostomus carolinensis Caprimulgidae Caprimulgiformes Chordata GCF_000700745.1 419 114394 0.3649412522972137 55.3 ["u12", "u6atac"] ASM70074v1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/700/745/GCF_000700745.1_ASM70074v1 GCF_000700745.1;PRJNA265383;SAMN02318612;JMFU00000000.1;representative genome;279965;279965;Antrostomus carolinensis;;BGI_N321;latest;Scaffold;Major;Full;2014/06/10;ASM70074v1;BGI;GCA_000700745.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/700/745/GCF_000700745.1_ASM70074v1;;;na 1
175835 Buceros rhinoceros Bucerotidae Bucerotiformes Chordata GCF_000710305.1 419 115044 0.3628868122255614 61.6 ["u12", "u6atac"] ASM71030v1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/710/305/GCF_000710305.1_ASM71030v1 GCF_000710305.1;PRJNA266010;SAMN02318191;JMFK00000000.1;representative genome;175836;175835;Buceros rhinoceros silvestris;;BGI_N320;latest;Scaffold;Major;Full;2014/06/25;ASM71030v1;BGI;GCA_000710305.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/710/305/GCF_000710305.1_ASM71030v1;;;na 1
55661 Cuculus canorus Cuculidae Cuculiformes Chordata GCF_000709325.1 526 144534 0.3626085757617537 94.1 ["u11", "u4atac", "u6atac"] ASM70932v1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/709/325/GCF_000709325.1_ASM70932v1 GCF_000709325.1;PRJNA263299;SAMN02298149;JNOX00000000.1;representative genome;55661;55661;Cuculus canorus;;BGI_N303;latest;Scaffold;Major;Full;2014/06/17;ASM70932v1;BGI;GCA_000709325.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/709/325/GCF_000709325.1_ASM70932v1;;;na 1
94827 Tinamus guttatus Tinamidae Tinamiformes Chordata GCF_000705375.1 503 138386 0.3621597102722318 76.9 ["u4atac", "u6atac"] ASM70537v2 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/705/375/GCF_000705375.1_ASM70537v2 GCF_000705375.1;PRJNA265201;SAMN02316659;JMFW00000000.2;representative genome;94827;94827;Tinamus guttatus;;BGI_N309;latest;Scaffold;Major;Full;2014/08/05;ASM70537v2;BGI;GCA_000705375.2;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/705/375/GCF_000705375.1_ASM70537v2;;;na 1
9818 Orycteropus afer Orycteropodidae Tubulidentata Chordata GCF_000298275.1 619 170416 0.3619142280819715 97.6 ["u11", "u12", "u4atac", "u6atac"] OryAfe1.0 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/298/275/GCF_000298275.1_OryAfe1.0 GCF_000298275.1;PRJNA237355;SAMN00744890;ALYB00000000.1;representative genome;1230840;9818;Orycteropus afer afer;;SDZICR_OR568_19922;latest;Scaffold;Major;Full;2012/09/20;OryAfe1.0;Broad Institute;GCA_000298275.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/298/275/GCF_000298275.1_OryAfe1.0;;;na 1
111125 Ranitomeya imitator Dendrobatidae Anura Chordata GCA_905332335.1 789 217221 0.361910004128251 89.0 ["u11", "u12", "u4atac", "u6atac"] Ranitomeya_imitator_genomeassembly_1.0 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/332/335/GCA_905332335.1_Ranitomeya_imitator_genomeassembly_1.0 GCA_905332335.1;PRJEB28312;SAMEA7339828;CAJOBX000000000.1;representative genome;111125;111125;Ranitomeya imitator;;;latest;Scaffold;Major;Full;2021/03/21;Ranitomeya_imitator_genomeassembly_1.0;EAST CAROLINA UNIVERSITY;na;na;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/332/335/GCA_905332335.1_Ranitomeya_imitator_genomeassembly_1.0;;;na 1
40157 Lonchura striata Estrildidae Passeriformes Chordata GCF_005870125.1 579 160531 0.359381788839923 97.3 ["u11", "u12", "u4atac", "u6atac"] lonStrDom2 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/005/870/125/GCF_005870125.1_lonStrDom2 GCF_005870125.1;PRJNA391487;SAMN11521339;SWKX00000000.1;representative genome;299123;40157;Lonchura striata domestica;;Mets1;latest;Chromosome;Major;Full;2019/06/05;lonStrDom2;HHMI/UCSF;GCA_005870125.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/005/870/125/GCF_005870125.1_lonStrDom2;;;na 1
240206 Pterocles gutturalis Pteroclidae Ciconiiformes Chordata GCF_000699245.1 408 113344 0.3586750123074759 64.7 ["u12", "u6atac"] ASM69924v1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/699/245/GCF_000699245.1_ASM69924v1 GCF_000699245.1;PRJNA265368;SAMN02339892;JMFR00000000.1;representative genome;240206;240206;Pterocles gutturalis;;BGI_N339;latest;Scaffold;Major;Full;2014/06/09;ASM69924v1;BGI;GCA_000699245.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/699/245/GCF_000699245.1_ASM69924v1;;;na 1
308060 Apteryx rowi Apterygidae Apterygiformes Chordata GCF_003343035.1 579 160955 0.3584384711577748 93.3 ["u11", "u12", "u4atac", "u6atac"] aptRow1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/343/035/GCF_003343035.1_aptRow1 GCF_003343035.1;PRJNA484763;SAMN08476454;PTFB00000000.1;representative genome;308060;308060;Apteryx rowi;;R43461;latest;Scaffold;Major;Full;2018/07/26;aptRow1;Harvard University;GCA_003343035.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/343/035/GCF_003343035.1_aptRow1;;;na 1
54383 Eurypyga helias Eurypygidae Gruiformes Chordata GCF_000690775.1 395 110024 0.3577282895153914 57.3 ["u11", "u12", "u4atac", "u6atac"] ASM69077v1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/690/775/GCF_000690775.1_ASM69077v1 GCF_000690775.1;PRJNA265393;SAMN02324546;JJRO00000000.1;representative genome;54383;54383;Eurypyga helias;;BGI_N326;latest;Scaffold;Major;Full;2014/05/13;ASM69077v1;BGI;GCA_000690775.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/690/775/GCF_000690775.1_ASM69077v1;;;na 1
143302 Condylura cristata Talpidae Eulipotyphla Chordata GCF_000260355.1 591 165023 0.3568538891639595 93.3 ["u11", "u12", "u4atac", "u6atac"] ConCri1.0 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/260/355/GCF_000260355.1_ConCri1.0 GCF_000260355.1;PRJNA193510;SAMN00727830;AJFV00000000.1;representative genome;143302;143302;Condylura cristata;;star-nosed mole 26May11;latest;Scaffold;Major;Full;2012/05/01;ConCri1.0;Broad Institute;GCA_000260355.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/260/355/GCF_000260355.1_ConCri1.0;;;na 1
291302 Miniopterus natalensis Vespertilionidae Chiroptera Chordata GCF_001595765.1 622 173932 0.3563367210147003 96.9 ["u11", "u12", "u4atac", "u6atac"] Mnat.v1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/595/765/GCF_001595765.1_Mnat.v1 GCF_001595765.1;PRJNA317472;SAMN03652541;LDJU00000000.1;representative genome;291302;291302;Miniopterus natalensis;;MN2012-01;latest;Scaffold;Major;Full;2016/03/22;Mnat.v1;University of California, San Francisco;GCA_001595765.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/595/765/GCF_001595765.1_Mnat.v1;;;na 1
356909 Onychostruthus taczanowskii Passeridae Passeriformes Chordata GCF_017590055.1 568 158940 0.3560949921007096 98.4 ["u11", "u12", "u4atac", "u6atac"] ASM1759005v1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/017/590/055/GCF_017590055.1_ASM1759005v1 GCF_017590055.1;PRJNA703052;SAMN18252883;JAGGNI000000000.1;representative genome;356909;356909;Onychostruthus taczanowskii;;IOZ18803;latest;Scaffold;Major;Full;2021/03/26;ASM1759005v1;Institute of Zoology, Chinese Academy of Sciences;GCA_017590055.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/017/590/055/GCF_017590055.1_ASM1759005v1;;;na 1
8673 Pseudonaja textilis Elapidae Squamata Chordata GCF_900518735.1 638 178673 0.3558063922458745 96.9 ["u11", "u12", "u4atac", "u6atac"] EBS10Xv2-PRI https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/518/735/GCF_900518735.1_EBS10Xv2-PRI GCF_900518735.1;PRJNA495355;SAMEA4800208;ULFR00000000.1;representative genome;8673;8673;Pseudonaja textilis;;;latest;Scaffold;Major;Full;2018/09/24;EBS10Xv2-PRI;UNIVERSITY OF NEW SOUTH WALES;GCA_900518735.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/518/735/GCF_900518735.1_EBS10Xv2-PRI;;;na 1
79684 Microtus ochrogaster Cricetidae Rodentia Chordata GCF_000317375.1 645 180696 0.3556834913229771 97.6 ["u11", "u12", "u4atac", "u6atac"] MicOch1.0 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/317/375/GCF_000317375.1_MicOch1.0 GCF_000317375.1;PRJNA210839;SAMN00727831;AHZW00000000.1;representative genome;79684;79684;Microtus ochrogaster;;Prairie Vole_2;latest;Chromosome;Major;Full;2012/12/07;MicOch1.0;Broad Institute;GCA_000317375.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/317/375/GCF_000317375.1_MicOch1.0;;;na 1
48883 Geospiza fortis Thraupidae Passeriformes Chordata GCF_000277835.1 525 147101 0.3556284123392898 84.7 ["u12", "u4atac", "u6atac"] GeoFor_1.0 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/277/835/GCF_000277835.1_GeoFor_1.0 GCF_000277835.1;PRJNA217051;SAMN00839579;AKZB00000000.1;representative genome;48883;48883;Geospiza fortis;;;latest;Scaffold;Major;Full;2012/07/25;GeoFor_1.0;Beijing Genomics Institute;GCA_000277835.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/277/835/GCF_000277835.1_GeoFor_1.0;;;na 1
2489341 Strigops habroptila Psittacidae Psittaciformes Chordata GCF_004027225.2 608 170361 0.3556200246828372 99.2 ["u11", "u12", "u4atac", "u6atac"] bStrHab1.2.pri https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/027/225/GCF_004027225.2_bStrHab1.2.pri GCF_004027225.2;PRJNA558775;SAMN09948751;RXXE00000000.2;representative genome;2489341;2489341;Strigops habroptila;;Jane;latest;Chromosome;Major;Full;2020/03/04;bStrHab1.2.pri;Vertebrate Genomes Project;GCA_004027225.2;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/027/225/GCF_004027225.2_bStrHab1.2.pri;;;na 1
8897 Chaetura pelagica Apodidae Apodiformes Chordata GCF_000747805.1 496 138981 0.3556141872853589 87.8 ["u12", "u6atac"] ChaPel_1.0 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/747/805/GCF_000747805.1_ChaPel_1.0 GCF_000747805.1;PRJNA264987;SAMN03018471;AVOS00000000.1;representative genome;8897;8897;Chaetura pelagica;;M959;latest;Scaffold;Major;Full;2014/09/04;ChaPel_1.0;BGI;GCA_000747805.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/747/805/GCF_000747805.1_ChaPel_1.0;;;na 1
118200 Dryobates pubescens Picidae Piciformes Chordata GCF_000699005.1 490 137302 0.3556084533209475 90.2 ["u11", "u12", "u4atac", "u6atac"] ASM69900v1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/699/005/GCF_000699005.1_ASM69900v1 GCF_000699005.1;PRJNA263502;SAMN02314405;JJRU00000000.1;representative genome;118200;118200;Dryobates pubescens;;BGI_N307;latest;Scaffold;Major;Full;2014/06/06;ASM69900v1;BGI;GCA_000699005.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/699/005/GCF_000699005.1_ASM69900v1;;;na 1
1868482 Carlito syrichta Tarsiidae Primates Chordata GCF_000164805.1 621 174099 0.3554258241758242 94.5 ["u11", "u12", "u4atac", "u6atac"] Tarsius_syrichta-2.0.1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/164/805/GCF_000164805.1_Tarsius_syrichta-2.0.1 GCF_000164805.1;PRJNA236776;SAMN02445010;ABRT00000000.2;representative genome;1868482;1868482;Carlito syrichta;;Samal-C Ts95f;latest;Scaffold;Major;Full;2013/09/18;Tarsius_syrichta-2.0.1;Washington University (WashU);GCA_000164805.2;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/164/805/GCF_000164805.1_Tarsius_syrichta-2.0.1;;;na 1
9172 Sturnus vulgaris Sturnidae Passeriformes Chordata GCF_001447265.1 554 155352 0.3553423216553564 97.6 ["u11", "u12", "u4atac", "u6atac"] Sturnus_vulgaris-1.0 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/447/265/GCF_001447265.1_Sturnus_vulgaris-1.0 GCF_001447265.1;PRJNA304638;SAMN04029017;LNCF00000000.1;representative genome;9172;9172;Sturnus vulgaris;;715;latest;Scaffold;Major;Full;2015/11/20;Sturnus_vulgaris-1.0;McDonnell Genome Institute - Washington University School of Medicine;GCA_001447265.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/447/265/GCF_001447265.1_Sturnus_vulgaris-1.0;;;na 1
30464 Nothoprocta perdicaria Tinamidae Tinamiformes Chordata GCF_003342845.1 552 154817 0.3552832289581576 92.9 ["u12", "u4atac", "u6atac"] notPer1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/342/845/GCF_003342845.1_notPer1 GCF_003342845.1;PRJNA484763;SAMN08476459;PTEW00000000.1;representative genome;30464;30464;Nothoprocta perdicaria;;Ctin4;latest;Scaffold;Major;Full;2018/07/26;notPer1;Harvard University;GCA_003342845.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/342/845/GCF_003342845.1_notPer1;;;na 1
52644 Haliaeetus leucocephalus Accipitridae Accipitriformes Chordata GCF_000737465.1 551 155131 0.3539265939543428 95.3 ["u11", "u12", "u4atac", "u6atac"] Haliaeetus_leucocephalus-4.0 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/737/465/GCF_000737465.1_Haliaeetus_leucocephalus-4.0 GCF_000737465.1;PRJNA269279;SAMN02664716;JPRR00000000.1;representative genome;52644;52644;Haliaeetus leucocephalus;;CR32;latest;Scaffold;Major;Full;2014/08/04;Haliaeetus_leucocephalus-4.0;The Bald Eagle Consortium;GCA_000737465.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/737/465/GCF_000737465.1_Haliaeetus_leucocephalus-4.0;;;na 1
259920 Rhincodon typus Rhincodontidae Orectolobiformes Chordata GCF_001642345.1 589 165843 0.3538982887906172 81.6 ["u11", "u12", "u4atac", "u6atac"] ASM164234v2 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/642/345/GCF_001642345.1_ASM164234v2 GCF_001642345.1;PRJNA378405;SAMN04562461;LVEK00000000.2;representative genome;259920;259920;Rhincodon typus;;Ralph;latest;Scaffold;Major;Full;2017/03/03;ASM164234v2;Emory University;GCA_001642345.2;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/642/345/GCF_001642345.1_ASM164234v2;;;na 1
29088 Neomonachus schauinslandi Phocidae Carnivora Chordata GCF_002201575.2 631 177741 0.3537550736662704 98.4 ["u11", "u12", "u4atac", "u6atac"] ASM220157v2 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/201/575/GCF_002201575.2_ASM220157v2 GCF_002201575.2;PRJNA392091;SAMN06841387;NINY00000000.2;representative genome;29088;29088;Neomonachus schauinslandi;;;latest;Chromosome;Major;Full;2021/10/20;ASM220157v2;Johns Hopkins University;GCA_002201575.2;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/201/575/GCF_002201575.2_ASM220157v2;;;na 1
13146 Melopsittacus undulatus Psittaculidae Psittaciformes Chordata GCF_012275295.1 599 168872 0.3534528031344596 99.6 ["u11", "u12", "u4atac", "u6atac"] bMelUnd1.mat.Z https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/012/275/295/GCF_012275295.1_bMelUnd1.mat.Z GCF_012275295.1;PRJNA629576;SAMN12623090;JAAVWG000000000.1;representative genome;13146;13146;Melopsittacus undulatus;;bMelUnd1;latest;Chromosome;Major;Full;2020/04/13;bMelUnd1.mat.Z;G10K;GCA_012275295.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/012/275/295/GCF_012275295.1_bMelUnd1.mat.Z;;;na 1
221976 Pyrgilauda ruficollis Passeridae Passeriformes Chordata GCF_017590135.1 563 158977 0.3528895574777485 96.5 ["u11", "u12", "u4atac", "u6atac"] ASM1759013v1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/017/590/135/GCF_017590135.1_ASM1759013v1 GCF_017590135.1;PRJNA703052;SAMN18252884;JAGGNJ000000000.1;representative genome;221976;221976;Pyrgilauda ruficollis;;IOZ18807;latest;Scaffold;Major;Full;2021/03/26;ASM1759013v1;Institute of Zoology, Chinese Academy of Sciences;GCA_017590135.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/017/590/135/GCF_017590135.1_ASM1759013v1;;;na 1
9925 Capra hircus Bovidae Artiodactyla Chordata GCF_001704415.1 674 190325 0.3528814286985796 98.8 ["u11", "u12", "u4atac", "u6atac"] ARS1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/704/415/GCF_001704415.1_ARS1 GCF_001704415.1;PRJNA340281;SAMN03863711;LWLT00000000.1;representative genome;9925;9925;Capra hircus;breed=San Clemente;;latest;Chromosome;Major;Full;2016/08/24;ARS1;USDA ARS;GCA_001704415.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/704/415/GCF_001704415.1_ARS1;;;na 1
87175 Camarhynchus parvulus Thraupidae Passeriformes Chordata GCF_901933205.1 574 162114 0.3528225806451612 99.6 ["u11", "u12", "u4atac", "u6atac"] STF_HiC https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/901/933/205/GCF_901933205.1_STF_HiC GCF_901933205.1;PRJNA566393;SAMEA5603054;CABFNF000000000.1;representative genome;87175;87175;Camarhynchus parvulus;;;latest;Chromosome;Major;Full;2019/09/06;STF_HiC;UPPSALA UNIVERISTY;GCA_901933205.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/901/933/205/GCF_901933205.1_STF_HiC;;;na 1
84834 Molothrus ater Icteridae Passeriformes Chordata GCF_012460135.1 583 164681 0.3527689030883919 100.0 ["u11", "u12", "u4atac", "u6atac"] BPBGC_Mater_1.0 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/012/460/135/GCF_012460135.1_BPBGC_Mater_1.0 GCF_012460135.1;PRJNA665515;SAMN14074414;JAAQZI000000000.1;representative genome;84834;84834;Molothrus ater;breed=brown headed cowbird;BHLD 08-10-18;latest;Chromosome;Major;Full;2020/04/20;BPBGC_Mater_1.0;Brood Parasitic Bird Genomes Consortium;GCA_012460135.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/012/460/135/GCF_012460135.1_BPBGC_Mater_1.0;;;na 1
8969 Haliaeetus albicilla Accipitridae Accipitriformes Chordata GCF_000691405.1 427 120618 0.352761369738527 67.1 ["u11", "u6atac"] ASM69140v1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/691/405/GCF_000691405.1_ASM69140v1 GCF_000691405.1;PRJNA263514;SAMN02333670;JJRL00000000.1;representative genome;8969;8969;Haliaeetus albicilla;;BGI_N329;latest;Scaffold;Major;Full;2014/05/15;ASM69140v1;BGI;GCA_000691405.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/691/405/GCF_000691405.1_ASM69140v1;;;na 1
35005 Thamnophis elegans Colubridae Squamata Chordata GCF_009769535.1 630 177990 0.3527040644944575 98.0 ["u11", "u12", "u4atac", "u6atac"] rThaEle1.pri https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/769/535/GCF_009769535.1_rThaEle1.pri GCF_009769535.1;PRJNA602516;SAMN12629499;WNNA00000000.1;representative genome;35005;35005;Thamnophis elegans;;rThaEle1;latest;Chromosome;Major;Full;2019/12/23;rThaEle1.pri;Vertebrate Genomes Project;GCA_009769535.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/769/535/GCF_009769535.1_rThaEle1.pri;;;na 1
28377 Anolis carolinensis Dactyloidae Squamata Chordata GCF_000090745.1 610 172461 0.3524565062893263 87.8 ["u11", "u12", "u4atac", "u6atac"] AnoCar2.0 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/090/745/GCF_000090745.1_AnoCar2.0 GCF_000090745.1;PRJNA60547;SAMN02981230;AAWZ00000000.2;representative genome;28377;28377;Anolis carolinensis;;;latest;Chromosome;Major;Full;2011/01/10;AnoCar2.0;Broad Institute;GCA_000090745.2;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/090/745/GCF_000090745.1_AnoCar2.0;;;na 1
8663 Notechis scutatus Elapidae Squamata Chordata GCF_900518725.1 607 171967 0.3517331695388645 95.3 ["u12", "u4atac", "u6atac"] TS10Xv2-PRI https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/518/725/GCF_900518725.1_TS10Xv2-PRI GCF_900518725.1;PRJNA494227;SAMEA4800209;ULFQ00000000.1;representative genome;8663;8663;Notechis scutatus;;;latest;Scaffold;Major;Full;2018/09/24;TS10Xv2-PRI;UNIVERSITY OF NEW SOUTH WALES;GCA_900518725.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/518/725/GCF_900518725.1_TS10Xv2-PRI;;;na 1
158814 Terrapene carolina Emydidae Testudines Chordata GCF_002925995.2 683 193499 0.351731880400861 98.0 ["u11", "u12", "u4atac", "u6atac"] T_m_triunguis-2.0 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/925/995/GCF_002925995.2_T_m_triunguis-2.0 GCF_002925995.2;PRJNA435426;SAMN08285364;PRFB00000000.2;representative genome;2587831;158814;Terrapene carolina triunguis;;2854851;latest;Scaffold;Major;Full;2018/09/21;T_m_triunguis-2.0;McDonnell Genome Institute - Washington University School of Medicine;GCA_002925995.2;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/925/995/GCF_002925995.2_T_m_triunguis-2.0;;;na 1
50402 Charadrius vociferus Charadriidae Charadriiformes Chordata GCF_000708025.1 503 142517 0.3516990630681024 88.2 ["u11", "u12", "u6atac"] ASM70802v2 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/708/025/GCF_000708025.1_ASM70802v2 GCF_000708025.1;PRJNA263452;SAMN02296710;JMFX00000000.2;representative genome;50402;50402;Charadrius vociferus;;BGI_N301;latest;Scaffold;Major;Full;2014/08/05;ASM70802v2;BGI;GCA_000708025.2;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/708/025/GCF_000708025.1_ASM70802v2;;;na 1
181119 Pseudopodoces humilis Paridae Passeriformes Chordata GCF_000331425.1 568 161095 0.3513481749070597 99.2 ["u11", "u12", "u4atac", "u6atac"] PseHum1.0 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/331/425/GCF_000331425.1_PseHum1.0 GCF_000331425.1;PRJNA217046;SAMN02981490;ANZD00000000.1;representative genome;181119;181119;Pseudopodoces humilis;;;latest;Scaffold;Major;Full;2013/01/11;PseHum1.0;Beijing Genomics Institute (BGI)-Shenzhen;GCA_000331425.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/331/425/GCF_000331425.1_PseHum1.0;;;na 1
61221 Varanus komodoensis Varanidae Squamata Chordata GCF_004798865.1 626 177618 0.3512039675949821 98.0 ["u11", "u12", "u4atac", "u6atac"] ASM479886v1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/798/865/GCF_004798865.1_ASM479886v1 GCF_004798865.1;PRJNA771140;SAMN10967258;SJPD00000000.1;representative genome;61221;61221;Varanus komodoensis;strain=SLA01;;latest;Scaffold;Major;Full;2019/04/17;ASM479886v1;Gladstone Institutes;GCA_004798865.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/798/865/GCF_004798865.1_ASM479886v1;;;na 1
103944 Protobothrops mucrosquamatus Viperidae Squamata Chordata GCF_001527695.2 604 171534 0.3508812696789785 96.5 ["u11", "u12", "u4atac", "u6atac"] P.Mucros_1.0 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/527/695/GCF_001527695.2_P.Mucros_1.0 GCF_001527695.2;PRJNA313429;SAMD00043515;BCNE00000000.2;representative genome;103944;103944;Protobothrops mucrosquamatus;;PMUCROS;latest;Scaffold;Minor;Full;2016/01/22;P.Mucros_1.0;Okinawa Institute of Science and Technology;GCA_001527695.3;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/527/695/GCF_001527695.2_P.Mucros_1.0;;;na 1
219594 Aythya fuligula Anatidae Anseriformes Chordata GCF_009819795.1 566 160783 0.350792381731526 98.8 ["u11", "u12", "u4atac", "u6atac"] bAytFul2.pri https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/819/795/GCF_009819795.1_bAytFul2.pri GCF_009819795.1;PRJNA602521;SAMN12621346;WNMM00000000.1;representative genome;219594;219594;Aythya fuligula;;bAytFul2;latest;Chromosome;Major;Full;2019/12/31;bAytFul2.pri;Vertebrate Genomes Project;GCA_009819795.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/819/795/GCF_009819795.1_bAytFul2.pri;;;na 1
43150 Hirundo rustica Hirundinidae Passeriformes Chordata GCF_015227805.1 577 163915 0.3507769374802422 96.5 ["u11", "u12", "u4atac", "u6atac"] bHirRus1.pri.v2 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/015/227/805/GCF_015227805.1_bHirRus1.pri.v2 GCF_015227805.1;PRJNA713843;SAMN14675488;JADDRP000000000.2;representative genome;43150;43150;Hirundo rustica;;bHirRus1;latest;Chromosome;Major;Full;2021/03/02;bHirRus1.pri.v2;Vertebrate Genomes Project;GCA_015227805.2;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/015/227/805/GCF_015227805.1_bHirRus1.pri.v2;;;na 1
164674 Empidonax traillii Tyrannidae Passeriformes Chordata GCF_003031625.1 569 161724 0.3506004571977842 96.5 ["u11", "u12", "u4atac", "u6atac"] ASM303162v1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/031/625/GCF_003031625.1_ASM303162v1 GCF_003031625.1;PRJNA516471;SAMN08663748;PWAB00000000.1;representative genome;164674;164674;Empidonax traillii;ecotype=Southwest subspecies;1590-97213;latest;Scaffold;Major;Full;2018/04/03;ASM303162v1;UCLA;GCA_003031625.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/031/625/GCF_003031625.1_ASM303162v1;;;na 1
10047 Meriones unguiculatus Muridae Rodentia Chordata GCF_002204375.1 656 186791 0.3499655902735173 96.1 ["u11", "u12", "u4atac", "u6atac"] MunDraft-v1.0 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/204/375/GCF_002204375.1_MunDraft-v1.0 GCF_002204375.1;PRJNA391923;SAMN06897401;NHTI00000000.1;representative genome;10047;10047;Meriones unguiculatus;strain=243;;latest;Scaffold;Major;Full;2017/06/21;MunDraft-v1.0;Lucigen Corp.;GCA_002204375.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/204/375/GCF_002204375.1_MunDraft-v1.0;;;na 1
9999 Urocitellus parryii Sciuridae Rodentia Chordata GCF_003426925.1 619 176328 0.3498222631635461 97.3 ["u11", "u12", "u4atac", "u6atac"] ASM342692v1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/426/925/GCF_003426925.1_ASM342692v1 GCF_003426925.1;PRJNA489874;SAMN09469529;QVIC00000000.1;representative genome;9999;9999;Urocitellus parryii;ecotype=Arctic tundra;AGS 11-09-20;latest;Scaffold;Major;Full;2018/08/24;ASM342692v1;UAF;GCA_003426925.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/426/925/GCF_003426925.1_ASM342692v1;;;na 1
176946 Python bivittatus Pythonidae Squamata Chordata GCF_000186305.1 604 172190 0.3495491741611398 90.2 ["u11", "u12", "u4atac", "u6atac"] Python_molurus_bivittatus-5.0.2 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/186/305/GCF_000186305.1_Python_molurus_bivittatus-5.0.2 GCF_000186305.1;PRJNA238085;SAMN02981298;AEQU00000000.2;representative genome;176946;176946;Python bivittatus;;;latest;Scaffold;Major;Full;2013/09/15;Python_molurus_bivittatus-5.0.2;The Consortium for Comparative Genomics, UC Denver;GCA_000186305.2;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/186/305/GCF_000186305.1_Python_molurus_bivittatus-5.0.2;;;na 1
8790 Dromaius novaehollandiae Dromaiidae Casuariiformes Chordata GCF_003342905.1 565 161258 0.349146907423543 97.3 ["u11", "u12", "u4atac", "u6atac"] droNov1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/342/905/GCF_003342905.1_droNov1 GCF_003342905.1;PRJNA484763;SAMN08476457;PTEY00000000.1;representative genome;8790;8790;Dromaius novaehollandiae;;6597;latest;Scaffold;Major;Full;2018/07/26;droNov1;Harvard University;GCA_003342905.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/342/905/GCF_003342905.1_droNov1;;;na 1
9778 Trichechus manatus Trichechidae Sirenia Chordata GCF_000243295.1 617 176114 0.3491181513147099 98.4 ["u11", "u12", "u4atac", "u6atac"] TriManLat1.0 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/243/295/GCF_000243295.1_TriManLat1.0 GCF_000243295.1;PRJNA189960;SAMN00632092;AHIN00000000.1;representative genome;127582;9778;Trichechus manatus latirostris;;Lorelei;latest;Scaffold;Major;Full;2012/01/23;TriManLat1.0;Broad Institute;GCA_000243295.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/243/295/GCF_000243295.1_TriManLat1.0;;;na 1
188344 Leptosomus discolor Leptosomidae Coraciiformes Chordata GCF_000691785.1 418 119316 0.3491071875991782 61.2 ["u11", "u12", "u6atac"] ASM69178v1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/691/785/GCF_000691785.1_ASM69178v1 GCF_000691785.1;PRJNA263616;SAMN02333687;JJRK00000000.1;representative genome;188344;188344;Leptosomus discolor;;BGI_N330;latest;Scaffold;Major;Full;2014/05/23;ASM69178v1;BGI;GCA_000691785.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/691/785/GCF_000691785.1_ASM69178v1;;;na 1
9715 Mirounga leonina Phocidae Carnivora Chordata GCF_011800145.1 662 188996 0.349049341446182 98.8 ["u11", "u12", "u4atac", "u6atac"] KU_Mleo_1.0 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/011/800/145/GCF_011800145.1_KU_Mleo_1.0 GCF_011800145.1;PRJNA638103;SAMN13282320;JAAMPH000000000.1;representative genome;9715;9715;Mirounga leonina;;KUSES-001;latest;Scaffold;Major;Full;2020/03/31;KU_Mleo_1.0;Earth Biogenome Project;GCA_011800145.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/011/800/145/GCF_011800145.1_KU_Mleo_1.0;;;na 1
9054 Phasianus colchicus Phasianidae Galliformes Chordata GCF_004143745.1 567 161975 0.3488329170306751 98.0 ["u11", "u12", "u4atac", "u6atac"] ASM414374v1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/143/745/GCF_004143745.1_ASM414374v1 GCF_004143745.1;PRJNA589599;SAMN08888240;QCWP00000000.1;representative genome;9054;9054;Phasianus colchicus;;SZU-A5-319;latest;Scaffold;Major;Full;2019/02/06;ASM414374v1;Shenzhen University;GCA_004143745.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/143/745/GCF_004143745.1_ASM414374v1;;;na 1
9244 Calypte anna Trochilidae Apodiformes Chordata GCF_003957555.1 537 153405 0.3488326772420781 94.9 ["u12", "u4atac", "u6atac"] bCalAnn1_v1.p https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/957/555/GCF_003957555.1_bCalAnn1_v1.p GCF_003957555.1;PRJNA558503;SAMN02265252;RRCD00000000.1;representative genome;9244;9244;Calypte anna;;BGI_N300;latest;Chromosome;Major;Full;2019/05/16;bCalAnn1_v1.p;Vertebrate Genomes Project;GCA_003957555.2;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/957/555/GCF_003957555.1_bCalAnn1_v1.p;;;na 1
260995 Geotrypetes seraphini Dermophiidae Gymnophiona Chordata GCF_902459505.1 657 187723 0.3487631383374031 99.2 ["u11", "u12", "u4atac", "u6atac"] aGeoSer1.1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/902/459/505/GCF_902459505.1_aGeoSer1.1 GCF_902459505.1;PRJNA627137;SAMEA104387963;CABPRQ000000000.1;representative genome;260995;260995;Geotrypetes seraphini;;;latest;Chromosome;Major;Full;2019/08/18;aGeoSer1.1;SC;GCA_902459505.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/902/459/505/GCF_902459505.1_aGeoSer1.1;;;na 1
8475 Chelydra serpentina Chelydridae Testudines Chordata GCA_018859375.1 546 156074 0.348614480909207 91.4 ["u11", "u12", "u4atac", "u6atac"] ASM1885937v1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/859/375/GCA_018859375.1_ASM1885937v1 GCA_018859375.1;PRJNA574487;SAMN13981802;JAHGAV000000000.1;representative genome;8475;8475;Chelydra serpentina;;KW;latest;Scaffold;Major;Full;2021/06/11;ASM1885937v1;University of North Dakota;na;na;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/859/375/GCA_018859375.1_ASM1885937v1;;;na 1
30611 Otolemur garnettii Galagidae Primates Chordata GCF_000181295.1 617 176440 0.3484753497461269 97.3 ["u11", "u12", "u4atac", "u6atac"] OtoGar3 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/181/295/GCF_000181295.1_OtoGar3 GCF_000181295.1;PRJNA169348;SAMN02981229;AAQR00000000.3;representative genome;30611;30611;Otolemur garnettii;;467f Iridium;latest;Scaffold;Major;Full;2011/03/16;OtoGar3;Broad Institute of MIT and Harvard, USA, Cambridge;GCA_000181295.3;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/181/295/GCF_000181295.1_OtoGar3;;;na 1
40151 Monodon monoceros Monodontidae Artiodactyla Chordata GCF_005190385.1 624 178652 0.348066668154131 99.6 ["u11", "u12", "u4atac", "u6atac"] NGI_Narwhal_1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/005/190/385/GCF_005190385.1_NGI_Narwhal_1 GCF_005190385.1;PRJNA542700;SAMN10872456;SIHG00000000.1;representative genome;40151;40151;Monodon monoceros;ecotype=Baffin Bay Population;NGI;latest;Scaffold;Major;Full;2019/05/06;NGI_Narwhal_1;The Narwhal Genome Initiative;GCA_005190385.2;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/005/190/385/GCF_005190385.1_NGI_Narwhal_1;;;na 1
185453 Chrysochloris asiatica Chrysochloridae   Chordata GCF_000296735.1 623 178592 0.3476271517451106 98.0 ["u11", "u12", "u4atac", "u6atac"] ChrAsi1.0 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/296/735/GCF_000296735.1_ChrAsi1.0 GCF_000296735.1;PRJNA232768;SAMN00744889;AMDV00000000.1;representative genome;185453;185453;Chrysochloris asiatica;;;latest;Scaffold;Major;Full;2012/09/19;ChrAsi1.0;Broad Institute;GCA_000296735.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/296/735/GCF_000296735.1_ChrAsi1.0;;;na 1
118797 Lipotes vexillifer Lipotidae Artiodactyla Chordata GCF_000442215.1 606 173778 0.3475089457748417 98.0 ["u11", "u12", "u4atac", "u6atac"] Lipotes_vexillifer_v1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/442/215/GCF_000442215.1_Lipotes_vexillifer_v1 GCF_000442215.1;PRJNA232751;SAMN02953859;AUPI00000000.1;representative genome;118797;118797;Lipotes vexillifer;;;latest;Scaffold;Major;Full;2013/07/31;Lipotes_vexillifer_v1;BGI;GCA_000442215.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/442/215/GCF_000442215.1_Lipotes_vexillifer_v1;;;na 1
91951 Catharus ustulatus Turdidae Passeriformes Chordata GCF_009819885.2 608 174426 0.3473610841322257 100.0 ["u11", "u12", "u4atac", "u6atac"] bCatUst1.pri.v2 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/819/885/GCF_009819885.2_bCatUst1.pri.v2 GCF_009819885.2;PRJNA613294;SAMN12618602;WNMQ00000000.2;representative genome;91951;91951;Catharus ustulatus;;bCatUst1;latest;Chromosome;Major;Full;2020/12/22;bCatUst1.pri.v2;Vertebrate Genomes Project;GCA_009819885.2;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/819/885/GCF_009819885.2_bCatUst1.pri.v2;;;na 1
30331 Bufo gargarizans Bufonidae Anura Chordata GCF_014858855.1 699 200536 0.3473550823663875 94.9 ["u11", "u12", "u4atac", "u6atac"] ASM1485885v1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/858/855/GCF_014858855.1_ASM1485885v1 GCF_014858855.1;PRJNA769289;SAMN14734018;JABFFT000000000.1;representative genome;30331;30331;Bufo gargarizans;;SCDJY-AF-19;latest;Chromosome;Major;Full;2020/10/21;ASM1485885v1;Chengdu Institute of Biology, CAS;GCA_014858855.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/858/855/GCF_014858855.1_ASM1485885v1;;;na 1
7868 Callorhinchus milii Callorhinchidae Chimaeriformes Chordata GCF_018977255.1 606 173861 0.3473436237225377 92.5 ["u11", "u12", "u4atac", "u6atac"] IMCB_Cmil_1.0 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/018/977/255/GCF_018977255.1_IMCB_Cmil_1.0 GCF_018977255.1;PRJNA744271;SAMN12905446;WEZY00000000.1;representative genome;7868;7868;Callorhinchus milii;;IMCB2004;latest;Scaffold;Major;Full;2021/06/21;IMCB_Cmil_1.0;Institute of Molecular and Cell Biology, A*star, Singapore;GCA_018977255.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/018/977/255/GCF_018977255.1_IMCB_Cmil_1.0;;;na 1
9707 Odobenus rosmarus Odobenidae Carnivora Chordata GCF_000321225.1 620 177897 0.3473058588257701 98.8 ["u11", "u12", "u4atac", "u6atac"] Oros_1.0 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/321/225/GCF_000321225.1_Oros_1.0 GCF_000321225.1;PRJNA189954;SAMN01180787;ANOP00000000.1;representative genome;9708;9707;Odobenus rosmarus divergens;;Ivan;latest;Scaffold;Major;Full;2013/01/16;Oros_1.0;Marine mammals;GCA_000321225.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/321/225/GCF_000321225.1_Oros_1.0;;;na 1
13397 Carcharodon carcharias Alopiidae Lamniformes Chordata GCF_017639515.1 663 190347 0.3471022459557091 98.8 ["u11", "u12", "u4atac", "u6atac"] sCarCar2.pri https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/017/639/515/GCF_017639515.1_sCarCar2.pri GCF_017639515.1;PRJNA725502;SAMN12629504;JAGDEE000000000.1;representative genome;13397;13397;Carcharodon carcharias;;sCarCar2;latest;Chromosome;Major;Full;2021/03/30;sCarCar2.pri;Vertebrate Genomes Project;GCA_017639515.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/017/639/515/GCF_017639515.1_sCarCar2.pri;;;na 1
189058 Neophocaena asiaeorientalis Phocoenidae Artiodactyla Chordata GCF_003031525.2 618 177478 0.3470038630850777 98.4 ["u11", "u12", "u4atac", "u6atac"] Neophocaena_asiaeorientalis_V1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/031/525/GCF_003031525.2_Neophocaena_asiaeorientalis_V1 GCF_003031525.2;PRJNA449518;SAMN05831577;MKKW00000000.1;representative genome;1706337;189058;Neophocaena asiaeorientalis asiaeorientalis;breed=wild;;latest;Scaffold;Minor;Full;2018/04/03;Neophocaena_asiaeorientalis_V1;Nanjing normal university;GCA_003031525.2;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/031/525/GCF_003031525.2_Neophocaena_asiaeorientalis_V1;;;na 1
9417 Artibeus jamaicensis Phyllostomidae Chiroptera Chordata GCF_014825515.1 640 183874 0.3468571490510205 98.0 ["u11", "u12", "u4atac", "u6atac"] WHU_Ajam_v2 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/825/515/GCF_014825515.1_WHU_Ajam_v2 GCF_014825515.1;PRJNA673233;SAMN12273914;VSFN00000000.1;representative genome;9417;9417;Artibeus jamaicensis;;1a;latest;Scaffold;Major;Full;2020/09/30;WHU_Ajam_v2;College of Life Sciences at Wuhan University;GCA_014825515.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/825/515/GCF_014825515.1_WHU_Ajam_v2;;;na 1
9627 Vulpes vulpes Canidae Carnivora Chordata GCF_003160815.1 637 183035 0.3468138856221961 99.2 ["u11", "u12", "u4atac", "u6atac"] VulVul2.2 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/160/815/GCF_003160815.1_VulVul2.2 GCF_003160815.1;PRJNA482864;SAMN06553695;NBDQ00000000.1;representative genome;9627;9627;Vulpes vulpes;strain=TameXAggressive cross;;latest;Scaffold;Major;Full;2018/05/25;VulVul2.2;University of Illinois at Urbana-Champaign;GCA_003160815.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/160/815/GCF_003160815.1_VulVul2.2;;;na 1
328815 Manacus vitellinus Pipridae Passeriformes Chordata GCF_001715985.3 519 149246 0.3465429172370046 87.5 ["u12", "u4atac", "u6atac"] ASM171598v3 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/715/985/GCF_001715985.3_ASM171598v3 GCF_001715985.3;PRJNA341382;SAMN02299332;MCBO00000000.3;representative genome;328815;328815;Manacus vitellinus;;BGI_N305;latest;Scaffold;Major;Full;2019/07/03;ASM171598v3;Smithsonian Institution National Museum of Natural History;GCA_001715985.3;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/715/985/GCF_001715985.3_ASM171598v3;;;na 1
44394 Zonotrichia albicollis Passerellidae Passeriformes Chordata GCF_000385455.1 502 144378 0.3464936499171728 75.7 ["u11", "u12", "u6atac"] Zonotrichia_albicollis-1.0.1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/385/455/GCF_000385455.1_Zonotrichia_albicollis-1.0.1 GCF_000385455.1;PRJNA217032;SAMN02981528;ARWJ00000000.1;representative genome;44394;44394;Zonotrichia albicollis;;Tan morph;latest;Scaffold;Major;Full;2013/04/30;Zonotrichia_albicollis-1.0.1;White-throated sparrow consortium;GCA_000385455.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/385/455/GCF_000385455.1_Zonotrichia_albicollis-1.0.1;;;na 1
37029 Prionailurus bengalensis Felidae Carnivora Chordata GCF_016509475.1 663 190686 0.3464873085304862 98.8 ["u11", "u12", "u4atac", "u6atac"] Fcat_Pben_1.1_paternal_pri https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/509/475/GCF_016509475.1_Fcat_Pben_1.1_paternal_pri GCF_016509475.1;PRJNA756971;SAMN16486448;JADZGN000000000.1;representative genome;37029;37029;Prionailurus bengalensis;;Pbe53;latest;Chromosome;Major;Full;2021/01/06;Fcat_Pben_1.1_paternal_pri;Texas A&M University;GCA_016509475.2;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/509/475/GCF_016509475.1_Fcat_Pben_1.1_paternal_pri;;;na 1
80427 Lacerta agilis Lacertidae Squamata Chordata GCF_009819535.1 654 188126 0.3464350037080199 99.6 ["u11", "u12", "u4atac", "u6atac"] rLacAgi1.pri https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/819/535/GCF_009819535.1_rLacAgi1.pri GCF_009819535.1;PRJNA614516;SAMN12629509;WNMS00000000.1;representative genome;80427;80427;Lacerta agilis;;rLacAgi1;latest;Chromosome;Major;Full;2019/12/31;rLacAgi1.pri;Vertebrate Genomes Project;GCA_009819535.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/819/535/GCF_009819535.1_rLacAgi1.pri;;;na 1
8524 Zootoca vivipara Lacertidae Squamata Chordata GCF_011800845.1 653 187848 0.3464172603858865 98.8 ["u11", "u12", "u4atac", "u6atac"] UG_Zviv_1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/011/800/845/GCF_011800845.1_UG_Zviv_1 GCF_011800845.1;PRJNA638687;SAMN14329711;JAATIO000000000.1;representative genome;8524;8524;Zootoca vivipara;;ELT05324;latest;Chromosome;Major;Full;2020/04/01;UG_Zviv_1;University of Glasgow;GCA_011800845.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/011/800/845/GCF_011800845.1_UG_Zviv_1;;;na 1
10093 Mus pahari Muridae Rodentia Chordata GCF_900095145.1 644 185299 0.3463426964177194 99.2 ["u11", "u12", "u4atac", "u6atac"] PAHARI_EIJ_v1.1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/095/145/GCF_900095145.1_PAHARI_EIJ_v1.1 GCF_900095145.1;PRJNA387191;SAMEA3367645;FMBV00000000.2;representative genome;10093;10093;Mus pahari;;;latest;Chromosome;Major;Full;2017/04/28;PAHARI_EIJ_v1.1;EBI;GCA_900095145.2;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/095/145/GCF_900095145.1_PAHARI_EIJ_v1.1;;;na 1
111838 Microtus oregoni Cricetidae Rodentia Chordata GCF_018167655.1 745 214409 0.346263606532995 99.2 ["u11", "u12", "u4atac", "u6atac"] Mior012 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/018/167/655/GCF_018167655.1_Mior012 GCF_018167655.1;PRJNA729470;SAMN18478481;JAGKIF000000000.1;representative genome;111838;111838;Microtus oregoni;;MIOR12;latest;Contig;Major;Full;2021/04/26;Mior012;Oklahoma State Universtiy;GCA_018167655.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/018/167/655/GCF_018167655.1_Mior012;;;na 1
188379 Egretta garzetta Ardeidae Pelecaniformes Chordata GCF_000687185.1 498 143452 0.3459534560611323 82.7 ["u12", "u6atac"] ASM68718v1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/687/185/GCF_000687185.1_ASM68718v1 GCF_000687185.1;PRJNA253831;SAMN02596466;JJRC00000000.1;representative genome;188379;188379;Egretta garzetta;;BGI_Z169;latest;Scaffold;Major;Full;2014/05/09;ASM68718v1;College of Medicine and Forensics, Xi'an Jiaotong University;GCA_000687185.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/687/185/GCF_000687185.1_ASM68718v1;;;na 1
191870 Gracilinanus agilis Didelphidae Didelphimorphia Chordata GCF_016433145.1 605 174365 0.3457735611819169 97.3 ["u11", "u12", "u4atac", "u6atac"] AgileGrace https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/433/145/GCF_016433145.1_AgileGrace GCF_016433145.1;PRJNA769689;SAMN16807781;JADWME000000000.1;representative genome;191870;191870;Gracilinanus agilis;;LMUSP501;latest;Chromosome;Major;Full;2021/01/06;AgileGrace;Nanjing Normal University;GCA_016433145.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/433/145/GCF_016433145.1_AgileGrace;;;na 1
59534 Oryx dammah Bovidae Artiodactyla Chordata GCF_014754425.2 667 192246 0.3457517119115871 99.2 ["u11", "u12", "u4atac", "u6atac"] SCBI_Odam_1.1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/754/425/GCF_014754425.2_SCBI_Odam_1.1 GCF_014754425.2;PRJNA694191;SAMN14518290;JABAEV000000000.1;representative genome;59534;59534;Oryx dammah;;SB20612;latest;Scaffold;Minor;Full;2020/09/25;SCBI_Odam_1.1;Smithsonian Conservation Biology Institute;GCA_014754425.2;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/754/425/GCF_014754425.2_SCBI_Odam_1.1;;;na 1
198806 Calidris pugnax Scolopacidae Charadriiformes Chordata GCF_001431845.1 575 165738 0.3457336467985064 97.6 ["u11", "u12", "u4atac", "u6atac"] ASM143184v1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/431/845/GCF_001431845.1_ASM143184v1 GCF_001431845.1;PRJNA305421;SAMN03491621;LDEH00000000.1;representative genome;198806;198806;Calidris pugnax;;Ruff;latest;Scaffold;Major;Full;2015/11/04;ASM143184v1;BGI;GCA_001431845.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/431/845/GCF_001431845.1_ASM143184v1;;;na 1
61156 Arvicanthis niloticus Muridae Rodentia Chordata GCF_011762505.1 669 192864 0.3456774813597681 99.6 ["u11", "u12", "u4atac", "u6atac"] mArvNil1.pat.X https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/011/762/505/GCF_011762505.1_mArvNil1.pat.X GCF_011762505.1;PRJNA632612;SAMN12611849;JAAOMG000000000.1;representative genome;61156;61156;Arvicanthis niloticus;;mArvNil1;latest;Chromosome;Major;Full;2020/03/27;mArvNil1.pat.X;Vertebrate Genomes Project;GCA_011762505.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/011/762/505/GCF_011762505.1_mArvNil1.pat.X;;;na 1
9135 Serinus canaria Fringillidae Passeriformes Chordata GCF_007115625.1 541 155992 0.3456140238799486 94.1 ["u11", "u12", "u4atac", "u6atac"] cibio_Scana_2019 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/007/115/625/GCF_007115625.1_cibio_Scana_2019 GCF_007115625.1;PRJNA558035;SAMN12017177;VKJK00000000.1;representative genome;9135;9135;Serinus canaria;ecotype=domestic yellow;sc_yellow_7_cibi;latest;Scaffold;Major;Full;2019/07/18;cibio_Scana_2019;CIBIO-InBIO;GCA_007115625.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/007/115/625/GCF_007115625.1_cibio_Scana_2019;;;na 1
9160 Passer montanus Passeridae Passeriformes Chordata GCF_014805655.1 570 164616 0.3450655624568668 96.9 ["u11", "u12", "u4atac", "u6atac"] ASM1480565v1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/805/655/GCF_014805655.1_ASM1480565v1 GCF_014805655.1;PRJNA703052;SAMN07998528;JABBVY000000000.1;representative genome;9160;9160;Passer montanus;;IOZ18808;latest;Scaffold;Major;Full;2020/09/30;ASM1480565v1;Institute of Zoology, Chinese Academy of Sciences;GCA_014805655.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/805/655/GCF_014805655.1_ASM1480565v1;;;na 1
34882 Enhydra lutris Mustelidae Carnivora Chordata GCF_002288905.1 629 181674 0.3450299775648234 99.2 ["u11", "u12", "u4atac", "u6atac"] ASM228890v2 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/288/905/GCF_002288905.1_ASM228890v2 GCF_002288905.1;PRJNA407952;SAMN07211055;NSES00000000.1;representative genome;391180;34882;Enhydra lutris kenyoni;;GAN:26980312;latest;Scaffold;Major;Full;2017/09/11;ASM228890v2;BC Cancer Agency;GCA_002288905.2;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/288/905/GCF_002288905.1_ASM228890v2;;;na 1
42100 Phocoena sinus Phocoenidae Artiodactyla Chordata GCF_008692025.1 630 182024 0.3449144283727703 99.2 ["u11", "u12", "u4atac", "u6atac"] mPhoSin1.pri https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/008/692/025/GCF_008692025.1_mPhoSin1.pri GCF_008692025.1;PRJNA606521;SAMN12325353;VOSU00000000.1;representative genome;42100;42100;Phocoena sinus;;mPhoSin1;latest;Chromosome;Major;Full;2019/09/26;mPhoSin1.pri;Vertebrate Genomes Project;GCA_008692025.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/008/692/025/GCF_008692025.1_mPhoSin1.pri;;;na 1
9407 Rousettus aegyptiacus Pteropodidae Chiroptera Chordata GCF_014176215.1 648 187263 0.34484410172901 99.2 ["u11", "u12", "u4atac", "u6atac"] mRouAeg1.p https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/176/215/GCF_014176215.1_mRouAeg1.p GCF_014176215.1;PRJNA665208;SAMN14734550;JACASE000000000.1;representative genome;9407;9407;Rousettus aegyptiacus;;mRouAeg1;latest;Scaffold;Major;Full;2020/08/07;mRouAeg1.p;Bat1K;GCA_014176215.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/176/215/GCF_014176215.1_mRouAeg1.p;;;na 1
93162 Marmota flaviventris Sciuridae Rodentia Chordata GCF_003676075.2 641 185284 0.344762673120882 98.4 ["u11", "u12", "u4atac", "u6atac"] GSC_YBM_2.0 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/676/075/GCF_003676075.2_GSC_YBM_2.0 GCF_003676075.2;PRJNA516936;SAMN10078668;QZWP00000000.2;representative genome;93162;93162;Marmota flaviventris;;SJ_83;latest;Scaffold;Major;Full;2019/05/24;GSC_YBM_2.0;Canada's Genomic Enterprise;GCA_003676075.2;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/676/075/GCF_003676075.2_GSC_YBM_2.0;;;na 1
27622 Molossus molossus Molossidae Chiroptera Chordata GCF_014108415.1 636 183848 0.3447453437696494 98.8 ["u11", "u12", "u4atac", "u6atac"] mMolMol1.p https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/108/415/GCF_014108415.1_mMolMol1.p GCF_014108415.1;PRJNA665629;SAMN14734448;JACASF000000000.1;representative genome;27622;27622;Molossus molossus;;mMolMol1;latest;Scaffold;Major;Full;2020/08/07;mMolMol1.p;Bat1K;GCA_014108415.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/108/415/GCF_014108415.1_mMolMol1.p;;;na 1
30410 Lagopus leucura Phasianidae Galliformes Chordata GCF_019238085.1 570 164816 0.3446482773632592 96.9 ["u11", "u12", "u4atac", "u6atac"] USGS_WTPT01 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/019/238/085/GCF_019238085.1_USGS_WTPT01 GCF_019238085.1;PRJNA752366;SAMN12859112;JAHKMA000000000.1;representative genome;30410;30410;Lagopus leucura;;7727_CA_CO;latest;Scaffold;Major;Full;2021/07/15;USGS_WTPT01;United States Geological Survey;GCA_019238085.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/019/238/085/GCF_019238085.1_USGS_WTPT01;;;na 1
9238 Pygoscelis adeliae Spheniscidae Sphenisciformes Chordata GCF_000699105.1 481 139143 0.3444966481407208 82.7 ["u11", "u12", "u6atac"] ASM69910v1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/699/105/GCF_000699105.1_ASM69910v1 GCF_000699105.1;PRJNA261076;SAMN02596601;JMFP00000000.1;representative genome;9238;9238;Pygoscelis adeliae;;BGI_AS28;latest;Scaffold;Major;Full;2014/06/06;ASM69910v1;BGI;GCA_000699105.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/699/105/GCF_000699105.1_ASM69910v1;;;na 1
9720 Phoca vitulina Phocidae Carnivora Chordata GCF_004348235.1 637 184291 0.3444583838034262 98.8 ["u11", "u12", "u4atac", "u6atac"] GSC_HSeal_1.0 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/348/235/GCF_004348235.1_GSC_HSeal_1.0 GCF_004348235.1;PRJNA605348;SAMN10150265;RXNX00000000.1;representative genome;9720;9720;Phoca vitulina;;PV1807;latest;Scaffold;Major;Full;2019/02/11;GSC_HSeal_1.0;Canada's Genome Enterprise (CGEN);GCA_004348235.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/348/235/GCF_004348235.1_GSC_HSeal_1.0;;;na 1
34886 Eumetopias jubatus Otariidae Carnivora Chordata GCF_004028035.1 635 183924 0.3440634160349807 99.6 ["u11", "u12", "u4atac", "u6atac"] ASM402803v1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/028/035/GCF_004028035.1_ASM402803v1 GCF_004028035.1;PRJNA518921;SAMN09402722;SBAQ00000000.1;representative genome;34886;34886;Eumetopias jubatus;;GAN:26980396;latest;Scaffold;Major;Full;2019/01/15;ASM402803v1;Canada's Genomic Enterprise;GCA_004028035.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/028/035/GCF_004028035.1_ASM402803v1;;;na 1

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CREATE TABLE "genomes" (
"taxonomy_id" INTEGER,
  "species" TEXT,
  "family" TEXT,
  "order" TEXT,
  "phylum" TEXT,
  "accession" TEXT,
  "n_minor_introns" INTEGER,
  "n_major_introns" INTEGER,
  "percent_minor_introns" REAL,
  "busco_score" REAL,
  "minor_snRNAs" TEXT,
  "genome_version" TEXT,
  "source_url" TEXT,
  "source_metadata" TEXT,
  "minor_intron+" INTEGER
  ,PRIMARY KEY ([taxonomy_id])
);
CREATE INDEX [idx_genomes_phylum]
    ON [genomes] ([phylum]);
CREATE INDEX [idx_genomes_order]
    ON [genomes] ([order]);
CREATE INDEX [idx_genomes_family]
    ON [genomes] ([family]);