genomes

Data license: ODbL · Data source: Larue & Roy, 2023

taxonomy_id
INTEGER (primary key), unique identifier for each species
species
TEXT, binomial name of the species
family
TEXT, taxonomic family of the species
order
TEXT, taxonomic order of the species
phylum
TEXT, taxonomic phylum of the species
accession
TEXT, accession number of the genome assembly
n_minor_introns
INTEGER, total number of minor introns in the genome
n_major_introns
INTEGER, total number of major introns in the genome
percent_minor_introns
REAL, percentage of minor introns in the genome
busco_score
REAL, BUSCO score assessing the genome assembly completeness (vs. eukaryota_odb10)
minor_snRNAs
TEXT, minor snRNAs found in the annotated transcriptome
genome_version
TEXT, version of the genome assembly
source_url
TEXT, URL for the source genome/annotation files
source_metadata
TEXT, additional metadata from the original data source
minor_intron+
INTEGER, indicates if the species is inferred to contain real minor introns (1) or not (0)

1,566 rows where minor_snRNAs contains "u6atac" sorted by percent_minor_introns descending

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Suggested facets: phylum, minor_snRNAs, minor_snRNAs (array)

taxonomy_id species family order phylum accession n_minor_introns n_major_introns percent_minor_introns ▲ busco_score minor_snRNAs genome_version source_url source_metadata minor_intron+
5791 Physarum polycephalum Physaraceae Physariida Evosea GCA_000413255.3 20295 159710 11.27468681425516 66.3 ["u11", "u12", "u6atac"] Physarum_polycephalum-10.0 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/413/255/GCA_000413255.3_Physarum_polycephalum-10.0 GCA_000413255.3;PRJNA12851;SAMN02839457;ATCM00000000.3;representative genome;5791;5791;Physarum polycephalum;strain=LU352;;latest;Scaffold;Major;Full;2014/06/30;Physarum_polycephalum-10.0;WUGSC;na;na;ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/413/255/GCA_000413255.3_Physarum_polycephalum-10.0;;;na 1
944036 Blastocystis sp. subtype 1 Blastocystidae Opalinata   GCA_001651215.1 253 35751 0.7026997000333296 66.7 ["u11", "u12", "u4atac", "u6atac"] ASM165121v1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/651/215/GCA_001651215.1_ASM165121v1 GCA_001651215.1;PRJNA308101;SAMN04386717;LXWW00000000.1;representative genome;478820;944036;Blastocystis sp. ATCC 50177/Nand II;strain=NandII;;latest;Scaffold;Major;Full;2016/05/24;ASM165121v1;Dalhousie University;na;na;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/651/215/GCA_001651215.1_ASM165121v1;;;na 1
423460 Basidiobolus meristosporus Basidiobolaceae Basidiobolales Zoopagomycota GCA_002104905.1 249 44710 0.5538379412353477 96.5 ["u11", "u12", "u4atac", "u6atac"] Basme2finSC https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/104/905/GCA_002104905.1_Basme2finSC GCA_002104905.1;PRJNA196075;SAMN02745972;MCFE00000000.1;representative genome;1314790;423460;Basidiobolus meristosporus CBS 931.73;strain=CBS 931.73;;latest;Contig;Major;Full;2017/04/20;Basme2finSC;DOE Joint Genome Institute;na;na;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/104/905/GCA_002104905.1_Basme2finSC;;;na 1
46731 Pocillopora damicornis Pocilloporidae Scleractinia Cnidaria GCF_003704095.1 633 144761 0.4353687222306284 88.6 ["u11", "u12", "u4atac", "u6atac"] ASM370409v1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/704/095/GCF_003704095.1_ASM370409v1 GCF_003704095.1;PRJNA506040;SAMN09007954;RCHS00000000.1;representative genome;46731;46731;Pocillopora damicornis;;RSMAS;latest;Scaffold;Major;Full;2018/10/31;ASM370409v1;University of Miami;GCA_003704095.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/704/095/GCF_003704095.1_ASM370409v1;;;na 1
48498 Orbicella faveolata Merulinidae Scleractinia Cnidaria GCF_002042975.1 658 153770 0.4260885331675602 87.1 ["u11", "u12", "u4atac", "u6atac"] ofav_dov_v1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/042/975/GCF_002042975.1_ofav_dov_v1 GCF_002042975.1;PRJNA381078;SAMN06562666;MZGG00000000.1;representative genome;48498;48498;Orbicella faveolata;;FL;latest;Scaffold;Major;Full;2017/03/20;ofav_dov_v1;Smithsonian Tropical Research Institute;GCA_002042975.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/042/975/GCF_002042975.1_ofav_dov_v1;;;na 1
37653 Octopus bimaculoides Octopodidae Octopoda Mollusca GCF_001194135.1 505 118177 0.4255068165349421 92.2 ["u11", "u12", "u4atac", "u6atac"] Octopus_bimaculoides_v2_0 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/194/135/GCF_001194135.1_Octopus_bimaculoides_v2_0 GCF_001194135.1;PRJNA305125;SAMN03271701;LGKD00000000.1;representative genome;37653;37653;Octopus bimaculoides;;UCB-OBI-ISO-001;latest;Scaffold;Major;Full;2015/08/18;Octopus_bimaculoides_v2_0;Vincent J. Coates Genomic Sequencing Laboratory at UC Berkeley;GCA_001194135.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/194/135/GCF_001194135.1_Octopus_bimaculoides_v2_0;;;na 1
7604 Asterias rubens Asteriidae Forcipulatida Echinodermata GCF_902459465.1 605 144606 0.4166351034012574 99.2 ["u11", "u12", "u4atac", "u6atac"] eAstRub1.3 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/902/459/465/GCF_902459465.1_eAstRub1.3 GCF_902459465.1;PRJNA626669;SAMEA994741;CABPRM000000000.3;representative genome;7604;7604;Asterias rubens;;;latest;Chromosome;Major;Full;2020/02/12;eAstRub1.3;SC;GCA_902459465.3;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/902/459/465/GCF_902459465.1_eAstRub1.3;;;na 1
45351 Nematostella vectensis Edwardsiidae Actiniaria Cnidaria GCF_000209225.1 682 163077 0.4164656599026618 93.7 ["u11", "u12", "u4atac", "u6atac"] ASM20922v1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/209/225/GCF_000209225.1_ASM20922v1 GCF_000209225.1;PRJNA19965;SAMN02953687;ABAV00000000.1;representative genome;45351;45351;Nematostella vectensis;strain=CH2 x CH6;;latest;Scaffold;Major;Full;2007/08/22;ASM20922v1;DOE Joint Genome Institute (JGI);GCA_000209225.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/209/225/GCF_000209225.1_ASM20922v1;;;na 1
6105 Actinia tenebrosa Actiniidae Actiniaria Cnidaria GCF_009602425.1 609 146062 0.4152150050112156 95.3 ["u11", "u12", "u4atac", "u6atac"] ASM960242v1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/602/425/GCF_009602425.1_ASM960242v1 GCF_009602425.1;PRJNA590223;SAMN10439458;WAHB00000000.1;representative genome;6105;6105;Actinia tenebrosa;;;latest;Scaffold;Major;Full;2019/11/06;ASM960242v1;QUT;GCA_009602425.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/602/425/GCF_009602425.1_ASM960242v1;;;na 1
2652724 Exaiptasia diaphana Aiptasiidae Actiniaria Cnidaria GCF_001417965.1 590 142729 0.4116690738841326 93.3 ["u11", "u12", "u4atac", "u6atac"] Aiptasia genome 1.1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/417/965/GCF_001417965.1_Aiptasia_genome_1.1 GCF_001417965.1;PRJNA386175;SAMN03839803;LJWW00000000.1;representative genome;2652724;2652724;Exaiptasia diaphana;;CC7;latest;Scaffold;Major;Full;2015/10/28;Aiptasia genome 1.1;KAUST;GCA_001417965.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/417/965/GCF_001417965.1_Aiptasia_genome_1.1;;;na 1
9915 Bos indicus Bovidae Artiodactyla Chordata GCF_000247795.1 688 171989 0.398431754084215 93.7 ["u11", "u12", "u4atac", "u6atac"] Bos_indicus_1.0 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/247/795/GCF_000247795.1_Bos_indicus_1.0 GCF_000247795.1;PRJNA360096;SAMN02953802;AGFL00000000.1;representative genome;9915;9915;Bos indicus;breed=Nelore;QUIL7308;latest;Chromosome;Major;Full;2014/11/25;Bos_indicus_1.0;Genoa Biotecnologia SA ;GCA_000247795.2;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/247/795/GCF_000247795.1_Bos_indicus_1.0;;;na 1
133434 Acanthaster planci Acanthasteridae Valvatida Echinodermata GCF_001949145.1 602 151442 0.3959380179421746 99.6 ["u11", "u12", "u4atac", "u6atac"] OKI-Apl_1.0 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/949/145/GCF_001949145.1_OKI-Apl_1.0 GCF_001949145.1;PRJNA397419;SAMD00054104;BDGF00000000.1;representative genome;133434;133434;Acanthaster planci;;;latest;Scaffold;Major;Full;2016/12/20;OKI-Apl_1.0;Okinawa Institute of Science and Technology;GCA_001949145.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/949/145/GCF_001949145.1_OKI-Apl_1.0;;;na 1
50429 Stylophora pistillata Pocilloporidae Scleractinia Cnidaria GCF_002571385.1 637 165556 0.383289308213944 90.6 ["u11", "u12", "u4atac", "u6atac"] Stylophora pistillata v1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/571/385/GCF_002571385.1_Stylophora_pistillata_v1 GCF_002571385.1;PRJNA415215;SAMN03491624;LSMT00000000.1;representative genome;50429;50429;Stylophora pistillata;;CSM Monaco;latest;Scaffold;Major;Full;2017/10/17;Stylophora pistillata v1;KAUST;GCA_002571385.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/571/385/GCF_002571385.1_Stylophora_pistillata_v1;;;na 1
187382 Chlamydotis macqueenii Otididae Gruiformes Chordata GCF_000695195.1 433 112937 0.381935256240628 60.0 ["u12", "u6atac"] ASM69519v1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/695/195/GCF_000695195.1_ASM69519v1 GCF_000695195.1;PRJNA266006;SAMN02324157;JMFJ00000000.1;representative genome;187382;187382;Chlamydotis macqueenii;;BGI_N324;latest;Scaffold;Major;Full;2014/06/02;ASM69519v1;BGI;GCA_000695195.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/695/195/GCF_000695195.1_ASM69519v1;;;na 1
36300 Pelecanus crispus Pelecanidae Pelecaniformes Chordata GCF_000687375.1 436 114858 0.3781636511873991 59.2 ["u11", "u6atac"] ASM68737v1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/687/375/GCF_000687375.1_ASM68737v1 GCF_000687375.1;PRJNA253833;SAMN02339887;JJRG00000000.1;representative genome;36300;36300;Pelecanus crispus;;BGI_N334;latest;Scaffold;Major;Full;2014/05/09;ASM68737v1;BGI;GCA_000687375.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/687/375/GCF_000687375.1_ASM68737v1;;;na 1
925459 Balearica regulorum Gruidae Gruiformes Chordata GCF_000709895.1 450 118975 0.376805526481055 60.8 ["u12", "u6atac"] ASM70989v1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/709/895/GCF_000709895.1_ASM70989v1 GCF_000709895.1;PRJNA264996;SAMN02318095;JJRR00000000.1;representative genome;100784;925459;Balearica regulorum gibbericeps;;BGI_N312;latest;Scaffold;Major;Full;2014/06/25;ASM70989v1;BGI;GCA_000709895.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/709/895/GCF_000709895.1_ASM70989v1;;;na 1
151771 Dendronephthya gigantea Nephtheidae Alcyonacea Cnidaria GCF_004324835.1 638 169687 0.3745780126229268 98.0 ["u11", "u12", "u4atac", "u6atac"] DenGig_1.0 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/324/835/GCF_004324835.1_DenGig_1.0 GCF_004324835.1;PRJNA529494;SAMN10516674;RSEI00000000.1;representative genome;151771;151771;Dendronephthya gigantea;;DGI-Jeju-01;latest;Contig;Major;Full;2019/03/04;DenGig_1.0;Ulsan National Institute of Science and Technology;GCA_004324835.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/324/835/GCF_004324835.1_DenGig_1.0;;;na 1
1529436 Anneissia japonica Comatulidae Comatulida Echinodermata GCF_011630105.1 583 155652 0.373155822959004 92.9 ["u11", "u12", "u4atac", "u6atac"] ASM1163010v1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/011/630/105/GCF_011630105.1_ASM1163010v1 GCF_011630105.1;PRJNA615663;SAMN12241982;VUNX00000000.1;representative genome;1529436;1529436;Anneissia japonica;;Jap-2015-1;latest;Scaffold;Major;Full;2020/03/23;ASM1163010v1;Center for Ecological and Environmental Sciences;GCA_011630105.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/011/630/105/GCF_011630105.1_ASM1163010v1;;;na 1
37040 Gavia stellata Gaviidae Gaviiformes Chordata GCF_000690875.1 420 112258 0.3727435701734145 61.6 ["u12", "u6atac"] ASM69087v1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/690/875/GCF_000690875.1_ASM69087v1 GCF_000690875.1;PRJNA261843;SAMN02324832;JJRM00000000.1;representative genome;37040;37040;Gavia stellata;;BGI_N328;latest;Scaffold;Major;Full;2014/05/13;ASM69087v1;BGI;GCA_000690875.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/690/875/GCF_000690875.1_ASM69087v1;;;na 1
2607531 Octopus sinensis Octopodidae Octopoda Mollusca GCF_006345805.1 548 146482 0.3727130517581446 98.0 ["u11", "u12", "u4atac", "u6atac"] ASM634580v1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/006/345/805/GCF_006345805.1_ASM634580v1 GCF_006345805.1;PRJNA551489;SAMN11633729;VCDQ00000000.1;representative genome;2607531;2607531;Octopus sinensis;;Ov201803;latest;Chromosome;Major;Full;2019/06/17;ASM634580v1;Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences;GCA_006345805.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/006/345/805/GCF_006345805.1_ASM634580v1;;;na 1
57397 Apaloderma vittatum Trogonidae Trogoniformes Chordata GCF_000703405.1 423 113269 0.3720578404813003 55.7 ["u12", "u4atac", "u6atac"] ASM70340v1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/703/405/GCF_000703405.1_ASM70340v1 GCF_000703405.1;PRJNA263608;SAMN02318033;JMFV00000000.1;representative genome;57397;57397;Apaloderma vittatum;;BGI_N311;latest;Scaffold;Major;Full;2014/06/16;ASM70340v1;BGI;GCA_000703405.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/703/405/GCF_000703405.1_ASM70340v1;;;na 1
45264 Acropora millepora Acroporidae Scleractinia Cnidaria GCF_013753865.1 721 193229 0.3717452951791699 97.3 ["u11", "u12", "u4atac", "u6atac"] Amil_v2.1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/013/753/865/GCF_013753865.1_Amil_v2.1 GCF_013753865.1;PRJNA767661;SAMN14973899;JACAWQ000000000.1;representative genome;45264;45264;Acropora millepora;;JS-1;latest;Chromosome;Major;Full;2020/07/29;Amil_v2.1;Columbia;GCA_013753865.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/013/753/865/GCF_013753865.1_Amil_v2.1;;;na 1
57421 Merops nubicus Meropidae Coraciiformes Chordata GCF_000691845.1 408 109553 0.3710406416820509 56.1 ["u12", "u6atac"] ASM69184v1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/691/845/GCF_000691845.1_ASM69184v1 GCF_000691845.1;PRJNA253837;SAMN02338310;JJRJ00000000.1;representative genome;57421;57421;Merops nubicus;;BGI_N331;latest;Scaffold;Major;Full;2014/05/16;ASM69184v1;BGI;GCA_000691845.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/691/845/GCF_000691845.1_ASM69184v1;;;na 1
57412 Colius striatus Coliidae Coliiformes Chordata GCF_000690715.1 408 109695 0.37056211002425 60.0 ["u12", "u6atac"] ASM69071v1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/690/715/GCF_000690715.1_ASM69071v1 GCF_000690715.1;PRJNA265879;SAMN02324230;JJRP00000000.1;representative genome;57412;57412;Colius striatus;;BGI_N325;latest;Scaffold;Major;Full;2014/05/13;ASM69071v1;BGI;GCA_000690715.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/690/715/GCF_000690715.1_ASM69071v1;;;na 1
121530 Tauraco erythrolophus Musophagidae Musophagiformes Chordata GCF_000709365.1 438 117995 0.3698293549939628 62.7 ["u12", "u6atac"] ASM70936v1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/709/365/GCF_000709365.1_ASM70936v1 GCF_000709365.1;PRJNA265115;SAMN02339893;JNOY00000000.1;representative genome;121530;121530;Tauraco erythrolophus;;BGI_N340;latest;Scaffold;Major;Full;2014/06/25;ASM70936v1;BGI;GCA_000709365.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/709/365/GCF_000709365.1_ASM70936v1;;;na 1
70779 Acropora digitifera Acroporidae Scleractinia Cnidaria GCF_000222465.1 559 150659 0.3696649869724503 75.3 ["u11", "u12", "u4atac", "u6atac"] Adig_1.1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/222/465/GCF_000222465.1_Adig_1.1 GCF_000222465.1;PRJNA314803;SAMD00004206;BACK00000000.2;representative genome;70779;70779;Acropora digitifera;;;latest;Scaffold;Major;Full;2016/01/15;Adig_1.1;Okinawa Institute of Science and Technology;GCA_000222465.2;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/222/465/GCF_000222465.1_Adig_1.1;;;na 1
57068 Acanthisitta chloris Acanthisittidae Passeriformes Chordata GCF_000695815.1 446 120410 0.3690342225458397 60.4 ["u11", "u12", "u6atac"] ASM69581v1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/695/815/GCF_000695815.1_ASM69581v1 GCF_000695815.1;PRJNA253841;SAMN02318032;JJRS00000000.1;representative genome;57068;57068;Acanthisitta chloris;;BGI_N310;latest;Scaffold;Major;Full;2014/05/27;ASM69581v1;BGI;GCA_000695815.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/695/815/GCF_000695815.1_ASM69581v1;;;na 1
97097 Phaethon lepturus Phaethontidae Pelecaniformes Chordata GCF_000687285.1 439 118622 0.3687185560343017 66.7 ["u12", "u6atac"] ASM68728v1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/687/285/GCF_000687285.1_ASM68728v1 GCF_000687285.1;PRJNA265998;SAMN02339888;JJRF00000000.1;representative genome;97097;97097;Phaethon lepturus;;BGI_N335;latest;Scaffold;Major;Full;2014/05/08;ASM68728v1;BGI;GCA_000687285.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/687/285/GCF_000687285.1_ASM68728v1;;;na 1
2897299 Xenia sp. carnegie-2017 Xeniidae Alcyonacea Cnidaria GCF_021976095.1 553 150473 0.3661621177810443 96.9 ["u11", "u12", "u4atac", "u6atac"] XeniaSp_v1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/021/976/095/GCF_021976095.1_XeniaSp_v1 GCF_021976095.1;PRJNA809689;SAMN23741995;JAJSDR000000000.1;representative genome;2897299;2897299;Xenia sp. Carnegie-2017;;Carnegie-2017;latest;Scaffold;Major;Full;2022/02/04;XeniaSp_v1;Carnegie Institution of Washington;GCA_021976095.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/021/976/095/GCF_021976095.1_XeniaSp_v1;;;na 1
54380 Cariama cristata Cariamidae Cariamiformes Chordata GCF_000690535.1 435 118570 0.3655308600478971 61.6 ["u12", "u6atac"] ASM69053v1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/690/535/GCF_000690535.1_ASM69053v1 GCF_000690535.1;PRJNA263623;SAMN02318733;JJRQ00000000.1;representative genome;54380;54380;Cariama cristata;;BGI_N322;latest;Scaffold;Major;Full;2014/05/12;ASM69053v1;BGI;GCA_000690535.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/690/535/GCF_000690535.1_ASM69053v1;;;na 1
279965 Antrostomus carolinensis Caprimulgidae Caprimulgiformes Chordata GCF_000700745.1 419 114394 0.3649412522972137 55.3 ["u12", "u6atac"] ASM70074v1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/700/745/GCF_000700745.1_ASM70074v1 GCF_000700745.1;PRJNA265383;SAMN02318612;JMFU00000000.1;representative genome;279965;279965;Antrostomus carolinensis;;BGI_N321;latest;Scaffold;Major;Full;2014/06/10;ASM70074v1;BGI;GCA_000700745.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/700/745/GCF_000700745.1_ASM70074v1;;;na 1
175835 Buceros rhinoceros Bucerotidae Bucerotiformes Chordata GCF_000710305.1 419 115044 0.3628868122255614 61.6 ["u12", "u6atac"] ASM71030v1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/710/305/GCF_000710305.1_ASM71030v1 GCF_000710305.1;PRJNA266010;SAMN02318191;JMFK00000000.1;representative genome;175836;175835;Buceros rhinoceros silvestris;;BGI_N320;latest;Scaffold;Major;Full;2014/06/25;ASM71030v1;BGI;GCA_000710305.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/710/305/GCF_000710305.1_ASM71030v1;;;na 1
55661 Cuculus canorus Cuculidae Cuculiformes Chordata GCF_000709325.1 526 144534 0.3626085757617537 94.1 ["u11", "u4atac", "u6atac"] ASM70932v1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/709/325/GCF_000709325.1_ASM70932v1 GCF_000709325.1;PRJNA263299;SAMN02298149;JNOX00000000.1;representative genome;55661;55661;Cuculus canorus;;BGI_N303;latest;Scaffold;Major;Full;2014/06/17;ASM70932v1;BGI;GCA_000709325.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/709/325/GCF_000709325.1_ASM70932v1;;;na 1
94827 Tinamus guttatus Tinamidae Tinamiformes Chordata GCF_000705375.1 503 138386 0.3621597102722318 76.9 ["u4atac", "u6atac"] ASM70537v2 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/705/375/GCF_000705375.1_ASM70537v2 GCF_000705375.1;PRJNA265201;SAMN02316659;JMFW00000000.2;representative genome;94827;94827;Tinamus guttatus;;BGI_N309;latest;Scaffold;Major;Full;2014/08/05;ASM70537v2;BGI;GCA_000705375.2;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/705/375/GCF_000705375.1_ASM70537v2;;;na 1
9818 Orycteropus afer Orycteropodidae Tubulidentata Chordata GCF_000298275.1 619 170416 0.3619142280819715 97.6 ["u11", "u12", "u4atac", "u6atac"] OryAfe1.0 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/298/275/GCF_000298275.1_OryAfe1.0 GCF_000298275.1;PRJNA237355;SAMN00744890;ALYB00000000.1;representative genome;1230840;9818;Orycteropus afer afer;;SDZICR_OR568_19922;latest;Scaffold;Major;Full;2012/09/20;OryAfe1.0;Broad Institute;GCA_000298275.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/298/275/GCF_000298275.1_OryAfe1.0;;;na 1
111125 Ranitomeya imitator Dendrobatidae Anura Chordata GCA_905332335.1 789 217221 0.361910004128251 89.0 ["u11", "u12", "u4atac", "u6atac"] Ranitomeya_imitator_genomeassembly_1.0 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/332/335/GCA_905332335.1_Ranitomeya_imitator_genomeassembly_1.0 GCA_905332335.1;PRJEB28312;SAMEA7339828;CAJOBX000000000.1;representative genome;111125;111125;Ranitomeya imitator;;;latest;Scaffold;Major;Full;2021/03/21;Ranitomeya_imitator_genomeassembly_1.0;EAST CAROLINA UNIVERSITY;na;na;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/332/335/GCA_905332335.1_Ranitomeya_imitator_genomeassembly_1.0;;;na 1
7654 Lytechinus variegatus Toxopneustidae Temnopleuroida Echinodermata GCF_018143015.1 685 188916 0.3612850143195447 99.2 ["u11", "u12", "u4atac", "u6atac"] Lvar_3.0 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/018/143/015/GCF_018143015.1_Lvar_3.0 GCF_018143015.1;PRJNA729485;SAMN15823010;JAFCXN000000000.1;representative genome;7654;7654;Lytechinus variegatus;;NC3;latest;Chromosome;Major;Full;2021/04/29;Lvar_3.0;Duke University;GCA_018143015.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/018/143/015/GCF_018143015.1_Lvar_3.0;;;na 1
407821 Stegodyphus mimosarum Eresidae Araneae Arthropoda GCA_000611955.2 325 89933 0.3600788849741851 78.4 ["u11", "u12", "u4atac", "u6atac"] Stegodyphus_mimosarum_v1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/611/955/GCA_000611955.2_Stegodyphus_mimosarum_v1 GCA_000611955.2;PRJNA222714;SAMN02720821;AZAQ00000000.1;representative genome;407821;407821;Stegodyphus mimosarum;;;latest;Scaffold;Major;Full;2014/08/01;Stegodyphus_mimosarum_v1;BGI;na;na;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/611/955/GCA_000611955.2_Stegodyphus_mimosarum_v1;;;na 1
40157 Lonchura striata Estrildidae Passeriformes Chordata GCF_005870125.1 579 160531 0.359381788839923 97.3 ["u11", "u12", "u4atac", "u6atac"] lonStrDom2 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/005/870/125/GCF_005870125.1_lonStrDom2 GCF_005870125.1;PRJNA391487;SAMN11521339;SWKX00000000.1;representative genome;299123;40157;Lonchura striata domestica;;Mets1;latest;Chromosome;Major;Full;2019/06/05;lonStrDom2;HHMI/UCSF;GCA_005870125.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/005/870/125/GCF_005870125.1_lonStrDom2;;;na 1
240206 Pterocles gutturalis Pteroclidae Ciconiiformes Chordata GCF_000699245.1 408 113344 0.3586750123074759 64.7 ["u12", "u6atac"] ASM69924v1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/699/245/GCF_000699245.1_ASM69924v1 GCF_000699245.1;PRJNA265368;SAMN02339892;JMFR00000000.1;representative genome;240206;240206;Pterocles gutturalis;;BGI_N339;latest;Scaffold;Major;Full;2014/06/09;ASM69924v1;BGI;GCA_000699245.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/699/245/GCF_000699245.1_ASM69924v1;;;na 1
308060 Apteryx rowi Apterygidae Apterygiformes Chordata GCF_003343035.1 579 160955 0.3584384711577748 93.3 ["u11", "u12", "u4atac", "u6atac"] aptRow1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/343/035/GCF_003343035.1_aptRow1 GCF_003343035.1;PRJNA484763;SAMN08476454;PTFB00000000.1;representative genome;308060;308060;Apteryx rowi;;R43461;latest;Scaffold;Major;Full;2018/07/26;aptRow1;Harvard University;GCA_003343035.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/343/035/GCF_003343035.1_aptRow1;;;na 1
54383 Eurypyga helias Eurypygidae Gruiformes Chordata GCF_000690775.1 395 110024 0.3577282895153914 57.3 ["u11", "u12", "u4atac", "u6atac"] ASM69077v1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/690/775/GCF_000690775.1_ASM69077v1 GCF_000690775.1;PRJNA265393;SAMN02324546;JJRO00000000.1;representative genome;54383;54383;Eurypyga helias;;BGI_N326;latest;Scaffold;Major;Full;2014/05/13;ASM69077v1;BGI;GCA_000690775.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/690/775/GCF_000690775.1_ASM69077v1;;;na 1
143302 Condylura cristata Talpidae Eulipotyphla Chordata GCF_000260355.1 591 165023 0.3568538891639595 93.3 ["u11", "u12", "u4atac", "u6atac"] ConCri1.0 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/260/355/GCF_000260355.1_ConCri1.0 GCF_000260355.1;PRJNA193510;SAMN00727830;AJFV00000000.1;representative genome;143302;143302;Condylura cristata;;star-nosed mole 26May11;latest;Scaffold;Major;Full;2012/05/01;ConCri1.0;Broad Institute;GCA_000260355.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/260/355/GCF_000260355.1_ConCri1.0;;;na 1
291302 Miniopterus natalensis Vespertilionidae Chiroptera Chordata GCF_001595765.1 622 173932 0.3563367210147003 96.9 ["u11", "u12", "u4atac", "u6atac"] Mnat.v1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/595/765/GCF_001595765.1_Mnat.v1 GCF_001595765.1;PRJNA317472;SAMN03652541;LDJU00000000.1;representative genome;291302;291302;Miniopterus natalensis;;MN2012-01;latest;Scaffold;Major;Full;2016/03/22;Mnat.v1;University of California, San Francisco;GCA_001595765.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/595/765/GCF_001595765.1_Mnat.v1;;;na 1
356909 Onychostruthus taczanowskii Passeridae Passeriformes Chordata GCF_017590055.1 568 158940 0.3560949921007096 98.4 ["u11", "u12", "u4atac", "u6atac"] ASM1759005v1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/017/590/055/GCF_017590055.1_ASM1759005v1 GCF_017590055.1;PRJNA703052;SAMN18252883;JAGGNI000000000.1;representative genome;356909;356909;Onychostruthus taczanowskii;;IOZ18803;latest;Scaffold;Major;Full;2021/03/26;ASM1759005v1;Institute of Zoology, Chinese Academy of Sciences;GCA_017590055.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/017/590/055/GCF_017590055.1_ASM1759005v1;;;na 1
8673 Pseudonaja textilis Elapidae Squamata Chordata GCF_900518735.1 638 178673 0.3558063922458745 96.9 ["u11", "u12", "u4atac", "u6atac"] EBS10Xv2-PRI https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/518/735/GCF_900518735.1_EBS10Xv2-PRI GCF_900518735.1;PRJNA495355;SAMEA4800208;ULFR00000000.1;representative genome;8673;8673;Pseudonaja textilis;;;latest;Scaffold;Major;Full;2018/09/24;EBS10Xv2-PRI;UNIVERSITY OF NEW SOUTH WALES;GCA_900518735.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/518/735/GCF_900518735.1_EBS10Xv2-PRI;;;na 1
79684 Microtus ochrogaster Cricetidae Rodentia Chordata GCF_000317375.1 645 180696 0.3556834913229771 97.6 ["u11", "u12", "u4atac", "u6atac"] MicOch1.0 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/317/375/GCF_000317375.1_MicOch1.0 GCF_000317375.1;PRJNA210839;SAMN00727831;AHZW00000000.1;representative genome;79684;79684;Microtus ochrogaster;;Prairie Vole_2;latest;Chromosome;Major;Full;2012/12/07;MicOch1.0;Broad Institute;GCA_000317375.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/317/375/GCF_000317375.1_MicOch1.0;;;na 1
48883 Geospiza fortis Thraupidae Passeriformes Chordata GCF_000277835.1 525 147101 0.3556284123392898 84.7 ["u12", "u4atac", "u6atac"] GeoFor_1.0 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/277/835/GCF_000277835.1_GeoFor_1.0 GCF_000277835.1;PRJNA217051;SAMN00839579;AKZB00000000.1;representative genome;48883;48883;Geospiza fortis;;;latest;Scaffold;Major;Full;2012/07/25;GeoFor_1.0;Beijing Genomics Institute;GCA_000277835.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/277/835/GCF_000277835.1_GeoFor_1.0;;;na 1
2489341 Strigops habroptila Psittacidae Psittaciformes Chordata GCF_004027225.2 608 170361 0.3556200246828372 99.2 ["u11", "u12", "u4atac", "u6atac"] bStrHab1.2.pri https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/027/225/GCF_004027225.2_bStrHab1.2.pri GCF_004027225.2;PRJNA558775;SAMN09948751;RXXE00000000.2;representative genome;2489341;2489341;Strigops habroptila;;Jane;latest;Chromosome;Major;Full;2020/03/04;bStrHab1.2.pri;Vertebrate Genomes Project;GCA_004027225.2;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/027/225/GCF_004027225.2_bStrHab1.2.pri;;;na 1
8897 Chaetura pelagica Apodidae Apodiformes Chordata GCF_000747805.1 496 138981 0.3556141872853589 87.8 ["u12", "u6atac"] ChaPel_1.0 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/747/805/GCF_000747805.1_ChaPel_1.0 GCF_000747805.1;PRJNA264987;SAMN03018471;AVOS00000000.1;representative genome;8897;8897;Chaetura pelagica;;M959;latest;Scaffold;Major;Full;2014/09/04;ChaPel_1.0;BGI;GCA_000747805.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/747/805/GCF_000747805.1_ChaPel_1.0;;;na 1
118200 Dryobates pubescens Picidae Piciformes Chordata GCF_000699005.1 490 137302 0.3556084533209475 90.2 ["u11", "u12", "u4atac", "u6atac"] ASM69900v1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/699/005/GCF_000699005.1_ASM69900v1 GCF_000699005.1;PRJNA263502;SAMN02314405;JJRU00000000.1;representative genome;118200;118200;Dryobates pubescens;;BGI_N307;latest;Scaffold;Major;Full;2014/06/06;ASM69900v1;BGI;GCA_000699005.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/699/005/GCF_000699005.1_ASM69900v1;;;na 1
1868482 Carlito syrichta Tarsiidae Primates Chordata GCF_000164805.1 621 174099 0.3554258241758242 94.5 ["u11", "u12", "u4atac", "u6atac"] Tarsius_syrichta-2.0.1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/164/805/GCF_000164805.1_Tarsius_syrichta-2.0.1 GCF_000164805.1;PRJNA236776;SAMN02445010;ABRT00000000.2;representative genome;1868482;1868482;Carlito syrichta;;Samal-C Ts95f;latest;Scaffold;Major;Full;2013/09/18;Tarsius_syrichta-2.0.1;Washington University (WashU);GCA_000164805.2;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/164/805/GCF_000164805.1_Tarsius_syrichta-2.0.1;;;na 1
9172 Sturnus vulgaris Sturnidae Passeriformes Chordata GCF_001447265.1 554 155352 0.3553423216553564 97.6 ["u11", "u12", "u4atac", "u6atac"] Sturnus_vulgaris-1.0 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/447/265/GCF_001447265.1_Sturnus_vulgaris-1.0 GCF_001447265.1;PRJNA304638;SAMN04029017;LNCF00000000.1;representative genome;9172;9172;Sturnus vulgaris;;715;latest;Scaffold;Major;Full;2015/11/20;Sturnus_vulgaris-1.0;McDonnell Genome Institute - Washington University School of Medicine;GCA_001447265.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/447/265/GCF_001447265.1_Sturnus_vulgaris-1.0;;;na 1
30464 Nothoprocta perdicaria Tinamidae Tinamiformes Chordata GCF_003342845.1 552 154817 0.3552832289581576 92.9 ["u12", "u4atac", "u6atac"] notPer1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/342/845/GCF_003342845.1_notPer1 GCF_003342845.1;PRJNA484763;SAMN08476459;PTEW00000000.1;representative genome;30464;30464;Nothoprocta perdicaria;;Ctin4;latest;Scaffold;Major;Full;2018/07/26;notPer1;Harvard University;GCA_003342845.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/342/845/GCF_003342845.1_notPer1;;;na 1
202533 Stegodyphus dumicola Eresidae Araneae Arthropoda GCF_010614865.1 440 123763 0.3542587538143201 81.2 ["u11", "u12", "u4atac", "u6atac"] ASM1061486v1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/010/614/865/GCF_010614865.1_ASM1061486v1 GCF_010614865.1;PRJNA642917;SAMN13619660;JAADJH000000000.1;representative genome;202533;202533;Stegodyphus dumicola;ecotype=Namibia, Etosha;AA2019;latest;Scaffold;Major;Full;2020/02/14;ASM1061486v1;None;GCA_010614865.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/010/614/865/GCF_010614865.1_ASM1061486v1;;;na 1
52644 Haliaeetus leucocephalus Accipitridae Accipitriformes Chordata GCF_000737465.1 551 155131 0.3539265939543428 95.3 ["u11", "u12", "u4atac", "u6atac"] Haliaeetus_leucocephalus-4.0 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/737/465/GCF_000737465.1_Haliaeetus_leucocephalus-4.0 GCF_000737465.1;PRJNA269279;SAMN02664716;JPRR00000000.1;representative genome;52644;52644;Haliaeetus leucocephalus;;CR32;latest;Scaffold;Major;Full;2014/08/04;Haliaeetus_leucocephalus-4.0;The Bald Eagle Consortium;GCA_000737465.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/737/465/GCF_000737465.1_Haliaeetus_leucocephalus-4.0;;;na 1
259920 Rhincodon typus Rhincodontidae Orectolobiformes Chordata GCF_001642345.1 589 165843 0.3538982887906172 81.6 ["u11", "u12", "u4atac", "u6atac"] ASM164234v2 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/642/345/GCF_001642345.1_ASM164234v2 GCF_001642345.1;PRJNA378405;SAMN04562461;LVEK00000000.2;representative genome;259920;259920;Rhincodon typus;;Ralph;latest;Scaffold;Major;Full;2017/03/03;ASM164234v2;Emory University;GCA_001642345.2;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/642/345/GCF_001642345.1_ASM164234v2;;;na 1
29088 Neomonachus schauinslandi Phocidae Carnivora Chordata GCF_002201575.2 631 177741 0.3537550736662704 98.4 ["u11", "u12", "u4atac", "u6atac"] ASM220157v2 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/201/575/GCF_002201575.2_ASM220157v2 GCF_002201575.2;PRJNA392091;SAMN06841387;NINY00000000.2;representative genome;29088;29088;Neomonachus schauinslandi;;;latest;Chromosome;Major;Full;2021/10/20;ASM220157v2;Johns Hopkins University;GCA_002201575.2;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/201/575/GCF_002201575.2_ASM220157v2;;;na 1
13146 Melopsittacus undulatus Psittaculidae Psittaciformes Chordata GCF_012275295.1 599 168872 0.3534528031344596 99.6 ["u11", "u12", "u4atac", "u6atac"] bMelUnd1.mat.Z https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/012/275/295/GCF_012275295.1_bMelUnd1.mat.Z GCF_012275295.1;PRJNA629576;SAMN12623090;JAAVWG000000000.1;representative genome;13146;13146;Melopsittacus undulatus;;bMelUnd1;latest;Chromosome;Major;Full;2020/04/13;bMelUnd1.mat.Z;G10K;GCA_012275295.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/012/275/295/GCF_012275295.1_bMelUnd1.mat.Z;;;na 1
221976 Pyrgilauda ruficollis Passeridae Passeriformes Chordata GCF_017590135.1 563 158977 0.3528895574777485 96.5 ["u11", "u12", "u4atac", "u6atac"] ASM1759013v1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/017/590/135/GCF_017590135.1_ASM1759013v1 GCF_017590135.1;PRJNA703052;SAMN18252884;JAGGNJ000000000.1;representative genome;221976;221976;Pyrgilauda ruficollis;;IOZ18807;latest;Scaffold;Major;Full;2021/03/26;ASM1759013v1;Institute of Zoology, Chinese Academy of Sciences;GCA_017590135.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/017/590/135/GCF_017590135.1_ASM1759013v1;;;na 1
9925 Capra hircus Bovidae Artiodactyla Chordata GCF_001704415.1 674 190325 0.3528814286985796 98.8 ["u11", "u12", "u4atac", "u6atac"] ARS1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/704/415/GCF_001704415.1_ARS1 GCF_001704415.1;PRJNA340281;SAMN03863711;LWLT00000000.1;representative genome;9925;9925;Capra hircus;breed=San Clemente;;latest;Chromosome;Major;Full;2016/08/24;ARS1;USDA ARS;GCA_001704415.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/704/415/GCF_001704415.1_ARS1;;;na 1
87175 Camarhynchus parvulus Thraupidae Passeriformes Chordata GCF_901933205.1 574 162114 0.3528225806451612 99.6 ["u11", "u12", "u4atac", "u6atac"] STF_HiC https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/901/933/205/GCF_901933205.1_STF_HiC GCF_901933205.1;PRJNA566393;SAMEA5603054;CABFNF000000000.1;representative genome;87175;87175;Camarhynchus parvulus;;;latest;Chromosome;Major;Full;2019/09/06;STF_HiC;UPPSALA UNIVERISTY;GCA_901933205.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/901/933/205/GCF_901933205.1_STF_HiC;;;na 1
84834 Molothrus ater Icteridae Passeriformes Chordata GCF_012460135.1 583 164681 0.3527689030883919 100.0 ["u11", "u12", "u4atac", "u6atac"] BPBGC_Mater_1.0 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/012/460/135/GCF_012460135.1_BPBGC_Mater_1.0 GCF_012460135.1;PRJNA665515;SAMN14074414;JAAQZI000000000.1;representative genome;84834;84834;Molothrus ater;breed=brown headed cowbird;BHLD 08-10-18;latest;Chromosome;Major;Full;2020/04/20;BPBGC_Mater_1.0;Brood Parasitic Bird Genomes Consortium;GCA_012460135.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/012/460/135/GCF_012460135.1_BPBGC_Mater_1.0;;;na 1
8969 Haliaeetus albicilla Accipitridae Accipitriformes Chordata GCF_000691405.1 427 120618 0.352761369738527 67.1 ["u11", "u6atac"] ASM69140v1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/691/405/GCF_000691405.1_ASM69140v1 GCF_000691405.1;PRJNA263514;SAMN02333670;JJRL00000000.1;representative genome;8969;8969;Haliaeetus albicilla;;BGI_N329;latest;Scaffold;Major;Full;2014/05/15;ASM69140v1;BGI;GCA_000691405.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/691/405/GCF_000691405.1_ASM69140v1;;;na 1
35005 Thamnophis elegans Colubridae Squamata Chordata GCF_009769535.1 630 177990 0.3527040644944575 98.0 ["u11", "u12", "u4atac", "u6atac"] rThaEle1.pri https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/769/535/GCF_009769535.1_rThaEle1.pri GCF_009769535.1;PRJNA602516;SAMN12629499;WNNA00000000.1;representative genome;35005;35005;Thamnophis elegans;;rThaEle1;latest;Chromosome;Major;Full;2019/12/23;rThaEle1.pri;Vertebrate Genomes Project;GCA_009769535.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/769/535/GCF_009769535.1_rThaEle1.pri;;;na 1
28377 Anolis carolinensis Dactyloidae Squamata Chordata GCF_000090745.1 610 172461 0.3524565062893263 87.8 ["u11", "u12", "u4atac", "u6atac"] AnoCar2.0 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/090/745/GCF_000090745.1_AnoCar2.0 GCF_000090745.1;PRJNA60547;SAMN02981230;AAWZ00000000.2;representative genome;28377;28377;Anolis carolinensis;;;latest;Chromosome;Major;Full;2011/01/10;AnoCar2.0;Broad Institute;GCA_000090745.2;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/090/745/GCF_000090745.1_AnoCar2.0;;;na 1
8663 Notechis scutatus Elapidae Squamata Chordata GCF_900518725.1 607 171967 0.3517331695388645 95.3 ["u12", "u4atac", "u6atac"] TS10Xv2-PRI https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/518/725/GCF_900518725.1_TS10Xv2-PRI GCF_900518725.1;PRJNA494227;SAMEA4800209;ULFQ00000000.1;representative genome;8663;8663;Notechis scutatus;;;latest;Scaffold;Major;Full;2018/09/24;TS10Xv2-PRI;UNIVERSITY OF NEW SOUTH WALES;GCA_900518725.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/518/725/GCF_900518725.1_TS10Xv2-PRI;;;na 1
158814 Terrapene carolina Emydidae Testudines Chordata GCF_002925995.2 683 193499 0.351731880400861 98.0 ["u11", "u12", "u4atac", "u6atac"] T_m_triunguis-2.0 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/925/995/GCF_002925995.2_T_m_triunguis-2.0 GCF_002925995.2;PRJNA435426;SAMN08285364;PRFB00000000.2;representative genome;2587831;158814;Terrapene carolina triunguis;;2854851;latest;Scaffold;Major;Full;2018/09/21;T_m_triunguis-2.0;McDonnell Genome Institute - Washington University School of Medicine;GCA_002925995.2;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/925/995/GCF_002925995.2_T_m_triunguis-2.0;;;na 1
50402 Charadrius vociferus Charadriidae Charadriiformes Chordata GCF_000708025.1 503 142517 0.3516990630681024 88.2 ["u11", "u12", "u6atac"] ASM70802v2 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/708/025/GCF_000708025.1_ASM70802v2 GCF_000708025.1;PRJNA263452;SAMN02296710;JMFX00000000.2;representative genome;50402;50402;Charadrius vociferus;;BGI_N301;latest;Scaffold;Major;Full;2014/08/05;ASM70802v2;BGI;GCA_000708025.2;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/708/025/GCF_000708025.1_ASM70802v2;;;na 1
181119 Pseudopodoces humilis Paridae Passeriformes Chordata GCF_000331425.1 568 161095 0.3513481749070597 99.2 ["u11", "u12", "u4atac", "u6atac"] PseHum1.0 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/331/425/GCF_000331425.1_PseHum1.0 GCF_000331425.1;PRJNA217046;SAMN02981490;ANZD00000000.1;representative genome;181119;181119;Pseudopodoces humilis;;;latest;Scaffold;Major;Full;2013/01/11;PseHum1.0;Beijing Genomics Institute (BGI)-Shenzhen;GCA_000331425.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/331/425/GCF_000331425.1_PseHum1.0;;;na 1
61221 Varanus komodoensis Varanidae Squamata Chordata GCF_004798865.1 626 177618 0.3512039675949821 98.0 ["u11", "u12", "u4atac", "u6atac"] ASM479886v1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/798/865/GCF_004798865.1_ASM479886v1 GCF_004798865.1;PRJNA771140;SAMN10967258;SJPD00000000.1;representative genome;61221;61221;Varanus komodoensis;strain=SLA01;;latest;Scaffold;Major;Full;2019/04/17;ASM479886v1;Gladstone Institutes;GCA_004798865.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/798/865/GCF_004798865.1_ASM479886v1;;;na 1
103944 Protobothrops mucrosquamatus Viperidae Squamata Chordata GCF_001527695.2 604 171534 0.3508812696789785 96.5 ["u11", "u12", "u4atac", "u6atac"] P.Mucros_1.0 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/527/695/GCF_001527695.2_P.Mucros_1.0 GCF_001527695.2;PRJNA313429;SAMD00043515;BCNE00000000.2;representative genome;103944;103944;Protobothrops mucrosquamatus;;PMUCROS;latest;Scaffold;Minor;Full;2016/01/22;P.Mucros_1.0;Okinawa Institute of Science and Technology;GCA_001527695.3;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/527/695/GCF_001527695.2_P.Mucros_1.0;;;na 1
219594 Aythya fuligula Anatidae Anseriformes Chordata GCF_009819795.1 566 160783 0.350792381731526 98.8 ["u11", "u12", "u4atac", "u6atac"] bAytFul2.pri https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/819/795/GCF_009819795.1_bAytFul2.pri GCF_009819795.1;PRJNA602521;SAMN12621346;WNMM00000000.1;representative genome;219594;219594;Aythya fuligula;;bAytFul2;latest;Chromosome;Major;Full;2019/12/31;bAytFul2.pri;Vertebrate Genomes Project;GCA_009819795.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/819/795/GCF_009819795.1_bAytFul2.pri;;;na 1
43150 Hirundo rustica Hirundinidae Passeriformes Chordata GCF_015227805.1 577 163915 0.3507769374802422 96.5 ["u11", "u12", "u4atac", "u6atac"] bHirRus1.pri.v2 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/015/227/805/GCF_015227805.1_bHirRus1.pri.v2 GCF_015227805.1;PRJNA713843;SAMN14675488;JADDRP000000000.2;representative genome;43150;43150;Hirundo rustica;;bHirRus1;latest;Chromosome;Major;Full;2021/03/02;bHirRus1.pri.v2;Vertebrate Genomes Project;GCA_015227805.2;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/015/227/805/GCF_015227805.1_bHirRus1.pri.v2;;;na 1
164674 Empidonax traillii Tyrannidae Passeriformes Chordata GCF_003031625.1 569 161724 0.3506004571977842 96.5 ["u11", "u12", "u4atac", "u6atac"] ASM303162v1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/031/625/GCF_003031625.1_ASM303162v1 GCF_003031625.1;PRJNA516471;SAMN08663748;PWAB00000000.1;representative genome;164674;164674;Empidonax traillii;ecotype=Southwest subspecies;1590-97213;latest;Scaffold;Major;Full;2018/04/03;ASM303162v1;UCLA;GCA_003031625.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/031/625/GCF_003031625.1_ASM303162v1;;;na 1
10047 Meriones unguiculatus Muridae Rodentia Chordata GCF_002204375.1 656 186791 0.3499655902735173 96.1 ["u11", "u12", "u4atac", "u6atac"] MunDraft-v1.0 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/204/375/GCF_002204375.1_MunDraft-v1.0 GCF_002204375.1;PRJNA391923;SAMN06897401;NHTI00000000.1;representative genome;10047;10047;Meriones unguiculatus;strain=243;;latest;Scaffold;Major;Full;2017/06/21;MunDraft-v1.0;Lucigen Corp.;GCA_002204375.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/204/375/GCF_002204375.1_MunDraft-v1.0;;;na 1
9999 Urocitellus parryii Sciuridae Rodentia Chordata GCF_003426925.1 619 176328 0.3498222631635461 97.3 ["u11", "u12", "u4atac", "u6atac"] ASM342692v1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/426/925/GCF_003426925.1_ASM342692v1 GCF_003426925.1;PRJNA489874;SAMN09469529;QVIC00000000.1;representative genome;9999;9999;Urocitellus parryii;ecotype=Arctic tundra;AGS 11-09-20;latest;Scaffold;Major;Full;2018/08/24;ASM342692v1;UAF;GCA_003426925.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/426/925/GCF_003426925.1_ASM342692v1;;;na 1
176946 Python bivittatus Pythonidae Squamata Chordata GCF_000186305.1 604 172190 0.3495491741611398 90.2 ["u11", "u12", "u4atac", "u6atac"] Python_molurus_bivittatus-5.0.2 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/186/305/GCF_000186305.1_Python_molurus_bivittatus-5.0.2 GCF_000186305.1;PRJNA238085;SAMN02981298;AEQU00000000.2;representative genome;176946;176946;Python bivittatus;;;latest;Scaffold;Major;Full;2013/09/15;Python_molurus_bivittatus-5.0.2;The Consortium for Comparative Genomics, UC Denver;GCA_000186305.2;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/186/305/GCF_000186305.1_Python_molurus_bivittatus-5.0.2;;;na 1
8790 Dromaius novaehollandiae Dromaiidae Casuariiformes Chordata GCF_003342905.1 565 161258 0.349146907423543 97.3 ["u11", "u12", "u4atac", "u6atac"] droNov1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/342/905/GCF_003342905.1_droNov1 GCF_003342905.1;PRJNA484763;SAMN08476457;PTEY00000000.1;representative genome;8790;8790;Dromaius novaehollandiae;;6597;latest;Scaffold;Major;Full;2018/07/26;droNov1;Harvard University;GCA_003342905.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/342/905/GCF_003342905.1_droNov1;;;na 1
9778 Trichechus manatus Trichechidae Sirenia Chordata GCF_000243295.1 617 176114 0.3491181513147099 98.4 ["u11", "u12", "u4atac", "u6atac"] TriManLat1.0 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/243/295/GCF_000243295.1_TriManLat1.0 GCF_000243295.1;PRJNA189960;SAMN00632092;AHIN00000000.1;representative genome;127582;9778;Trichechus manatus latirostris;;Lorelei;latest;Scaffold;Major;Full;2012/01/23;TriManLat1.0;Broad Institute;GCA_000243295.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/243/295/GCF_000243295.1_TriManLat1.0;;;na 1
188344 Leptosomus discolor Leptosomidae Coraciiformes Chordata GCF_000691785.1 418 119316 0.3491071875991782 61.2 ["u11", "u12", "u6atac"] ASM69178v1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/691/785/GCF_000691785.1_ASM69178v1 GCF_000691785.1;PRJNA263616;SAMN02333687;JJRK00000000.1;representative genome;188344;188344;Leptosomus discolor;;BGI_N330;latest;Scaffold;Major;Full;2014/05/23;ASM69178v1;BGI;GCA_000691785.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/691/785/GCF_000691785.1_ASM69178v1;;;na 1
9715 Mirounga leonina Phocidae Carnivora Chordata GCF_011800145.1 662 188996 0.349049341446182 98.8 ["u11", "u12", "u4atac", "u6atac"] KU_Mleo_1.0 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/011/800/145/GCF_011800145.1_KU_Mleo_1.0 GCF_011800145.1;PRJNA638103;SAMN13282320;JAAMPH000000000.1;representative genome;9715;9715;Mirounga leonina;;KUSES-001;latest;Scaffold;Major;Full;2020/03/31;KU_Mleo_1.0;Earth Biogenome Project;GCA_011800145.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/011/800/145/GCF_011800145.1_KU_Mleo_1.0;;;na 1
9054 Phasianus colchicus Phasianidae Galliformes Chordata GCF_004143745.1 567 161975 0.3488329170306751 98.0 ["u11", "u12", "u4atac", "u6atac"] ASM414374v1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/143/745/GCF_004143745.1_ASM414374v1 GCF_004143745.1;PRJNA589599;SAMN08888240;QCWP00000000.1;representative genome;9054;9054;Phasianus colchicus;;SZU-A5-319;latest;Scaffold;Major;Full;2019/02/06;ASM414374v1;Shenzhen University;GCA_004143745.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/143/745/GCF_004143745.1_ASM414374v1;;;na 1
9244 Calypte anna Trochilidae Apodiformes Chordata GCF_003957555.1 537 153405 0.3488326772420781 94.9 ["u12", "u4atac", "u6atac"] bCalAnn1_v1.p https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/957/555/GCF_003957555.1_bCalAnn1_v1.p GCF_003957555.1;PRJNA558503;SAMN02265252;RRCD00000000.1;representative genome;9244;9244;Calypte anna;;BGI_N300;latest;Chromosome;Major;Full;2019/05/16;bCalAnn1_v1.p;Vertebrate Genomes Project;GCA_003957555.2;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/957/555/GCF_003957555.1_bCalAnn1_v1.p;;;na 1
260995 Geotrypetes seraphini Dermophiidae Gymnophiona Chordata GCF_902459505.1 657 187723 0.3487631383374031 99.2 ["u11", "u12", "u4atac", "u6atac"] aGeoSer1.1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/902/459/505/GCF_902459505.1_aGeoSer1.1 GCF_902459505.1;PRJNA627137;SAMEA104387963;CABPRQ000000000.1;representative genome;260995;260995;Geotrypetes seraphini;;;latest;Chromosome;Major;Full;2019/08/18;aGeoSer1.1;SC;GCA_902459505.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/902/459/505/GCF_902459505.1_aGeoSer1.1;;;na 1
8475 Chelydra serpentina Chelydridae Testudines Chordata GCA_018859375.1 546 156074 0.348614480909207 91.4 ["u11", "u12", "u4atac", "u6atac"] ASM1885937v1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/859/375/GCA_018859375.1_ASM1885937v1 GCA_018859375.1;PRJNA574487;SAMN13981802;JAHGAV000000000.1;representative genome;8475;8475;Chelydra serpentina;;KW;latest;Scaffold;Major;Full;2021/06/11;ASM1885937v1;University of North Dakota;na;na;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/859/375/GCA_018859375.1_ASM1885937v1;;;na 1
30611 Otolemur garnettii Galagidae Primates Chordata GCF_000181295.1 617 176440 0.3484753497461269 97.3 ["u11", "u12", "u4atac", "u6atac"] OtoGar3 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/181/295/GCF_000181295.1_OtoGar3 GCF_000181295.1;PRJNA169348;SAMN02981229;AAQR00000000.3;representative genome;30611;30611;Otolemur garnettii;;467f Iridium;latest;Scaffold;Major;Full;2011/03/16;OtoGar3;Broad Institute of MIT and Harvard, USA, Cambridge;GCA_000181295.3;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/181/295/GCF_000181295.1_OtoGar3;;;na 1
40151 Monodon monoceros Monodontidae Artiodactyla Chordata GCF_005190385.1 624 178652 0.348066668154131 99.6 ["u11", "u12", "u4atac", "u6atac"] NGI_Narwhal_1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/005/190/385/GCF_005190385.1_NGI_Narwhal_1 GCF_005190385.1;PRJNA542700;SAMN10872456;SIHG00000000.1;representative genome;40151;40151;Monodon monoceros;ecotype=Baffin Bay Population;NGI;latest;Scaffold;Major;Full;2019/05/06;NGI_Narwhal_1;The Narwhal Genome Initiative;GCA_005190385.2;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/005/190/385/GCF_005190385.1_NGI_Narwhal_1;;;na 1
185453 Chrysochloris asiatica Chrysochloridae   Chordata GCF_000296735.1 623 178592 0.3476271517451106 98.0 ["u11", "u12", "u4atac", "u6atac"] ChrAsi1.0 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/296/735/GCF_000296735.1_ChrAsi1.0 GCF_000296735.1;PRJNA232768;SAMN00744889;AMDV00000000.1;representative genome;185453;185453;Chrysochloris asiatica;;;latest;Scaffold;Major;Full;2012/09/19;ChrAsi1.0;Broad Institute;GCA_000296735.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/296/735/GCF_000296735.1_ChrAsi1.0;;;na 1
118797 Lipotes vexillifer Lipotidae Artiodactyla Chordata GCF_000442215.1 606 173778 0.3475089457748417 98.0 ["u11", "u12", "u4atac", "u6atac"] Lipotes_vexillifer_v1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/442/215/GCF_000442215.1_Lipotes_vexillifer_v1 GCF_000442215.1;PRJNA232751;SAMN02953859;AUPI00000000.1;representative genome;118797;118797;Lipotes vexillifer;;;latest;Scaffold;Major;Full;2013/07/31;Lipotes_vexillifer_v1;BGI;GCA_000442215.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/442/215/GCF_000442215.1_Lipotes_vexillifer_v1;;;na 1
91951 Catharus ustulatus Turdidae Passeriformes Chordata GCF_009819885.2 608 174426 0.3473610841322257 100.0 ["u11", "u12", "u4atac", "u6atac"] bCatUst1.pri.v2 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/819/885/GCF_009819885.2_bCatUst1.pri.v2 GCF_009819885.2;PRJNA613294;SAMN12618602;WNMQ00000000.2;representative genome;91951;91951;Catharus ustulatus;;bCatUst1;latest;Chromosome;Major;Full;2020/12/22;bCatUst1.pri.v2;Vertebrate Genomes Project;GCA_009819885.2;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/819/885/GCF_009819885.2_bCatUst1.pri.v2;;;na 1
30331 Bufo gargarizans Bufonidae Anura Chordata GCF_014858855.1 699 200536 0.3473550823663875 94.9 ["u11", "u12", "u4atac", "u6atac"] ASM1485885v1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/858/855/GCF_014858855.1_ASM1485885v1 GCF_014858855.1;PRJNA769289;SAMN14734018;JABFFT000000000.1;representative genome;30331;30331;Bufo gargarizans;;SCDJY-AF-19;latest;Chromosome;Major;Full;2020/10/21;ASM1485885v1;Chengdu Institute of Biology, CAS;GCA_014858855.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/858/855/GCF_014858855.1_ASM1485885v1;;;na 1
7868 Callorhinchus milii Callorhinchidae Chimaeriformes Chordata GCF_018977255.1 606 173861 0.3473436237225377 92.5 ["u11", "u12", "u4atac", "u6atac"] IMCB_Cmil_1.0 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/018/977/255/GCF_018977255.1_IMCB_Cmil_1.0 GCF_018977255.1;PRJNA744271;SAMN12905446;WEZY00000000.1;representative genome;7868;7868;Callorhinchus milii;;IMCB2004;latest;Scaffold;Major;Full;2021/06/21;IMCB_Cmil_1.0;Institute of Molecular and Cell Biology, A*star, Singapore;GCA_018977255.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/018/977/255/GCF_018977255.1_IMCB_Cmil_1.0;;;na 1
9707 Odobenus rosmarus Odobenidae Carnivora Chordata GCF_000321225.1 620 177897 0.3473058588257701 98.8 ["u11", "u12", "u4atac", "u6atac"] Oros_1.0 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/321/225/GCF_000321225.1_Oros_1.0 GCF_000321225.1;PRJNA189954;SAMN01180787;ANOP00000000.1;representative genome;9708;9707;Odobenus rosmarus divergens;;Ivan;latest;Scaffold;Major;Full;2013/01/16;Oros_1.0;Marine mammals;GCA_000321225.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/321/225/GCF_000321225.1_Oros_1.0;;;na 1
13397 Carcharodon carcharias Alopiidae Lamniformes Chordata GCF_017639515.1 663 190347 0.3471022459557091 98.8 ["u11", "u12", "u4atac", "u6atac"] sCarCar2.pri https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/017/639/515/GCF_017639515.1_sCarCar2.pri GCF_017639515.1;PRJNA725502;SAMN12629504;JAGDEE000000000.1;representative genome;13397;13397;Carcharodon carcharias;;sCarCar2;latest;Chromosome;Major;Full;2021/03/30;sCarCar2.pri;Vertebrate Genomes Project;GCA_017639515.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/017/639/515/GCF_017639515.1_sCarCar2.pri;;;na 1
189058 Neophocaena asiaeorientalis Phocoenidae Artiodactyla Chordata GCF_003031525.2 618 177478 0.3470038630850777 98.4 ["u11", "u12", "u4atac", "u6atac"] Neophocaena_asiaeorientalis_V1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/031/525/GCF_003031525.2_Neophocaena_asiaeorientalis_V1 GCF_003031525.2;PRJNA449518;SAMN05831577;MKKW00000000.1;representative genome;1706337;189058;Neophocaena asiaeorientalis asiaeorientalis;breed=wild;;latest;Scaffold;Minor;Full;2018/04/03;Neophocaena_asiaeorientalis_V1;Nanjing normal university;GCA_003031525.2;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/031/525/GCF_003031525.2_Neophocaena_asiaeorientalis_V1;;;na 1
9417 Artibeus jamaicensis Phyllostomidae Chiroptera Chordata GCF_014825515.1 640 183874 0.3468571490510205 98.0 ["u11", "u12", "u4atac", "u6atac"] WHU_Ajam_v2 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/825/515/GCF_014825515.1_WHU_Ajam_v2 GCF_014825515.1;PRJNA673233;SAMN12273914;VSFN00000000.1;representative genome;9417;9417;Artibeus jamaicensis;;1a;latest;Scaffold;Major;Full;2020/09/30;WHU_Ajam_v2;College of Life Sciences at Wuhan University;GCA_014825515.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/825/515/GCF_014825515.1_WHU_Ajam_v2;;;na 1
9627 Vulpes vulpes Canidae Carnivora Chordata GCF_003160815.1 637 183035 0.3468138856221961 99.2 ["u11", "u12", "u4atac", "u6atac"] VulVul2.2 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/160/815/GCF_003160815.1_VulVul2.2 GCF_003160815.1;PRJNA482864;SAMN06553695;NBDQ00000000.1;representative genome;9627;9627;Vulpes vulpes;strain=TameXAggressive cross;;latest;Scaffold;Major;Full;2018/05/25;VulVul2.2;University of Illinois at Urbana-Champaign;GCA_003160815.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/160/815/GCF_003160815.1_VulVul2.2;;;na 1
328815 Manacus vitellinus Pipridae Passeriformes Chordata GCF_001715985.3 519 149246 0.3465429172370046 87.5 ["u12", "u4atac", "u6atac"] ASM171598v3 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/715/985/GCF_001715985.3_ASM171598v3 GCF_001715985.3;PRJNA341382;SAMN02299332;MCBO00000000.3;representative genome;328815;328815;Manacus vitellinus;;BGI_N305;latest;Scaffold;Major;Full;2019/07/03;ASM171598v3;Smithsonian Institution National Museum of Natural History;GCA_001715985.3;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/715/985/GCF_001715985.3_ASM171598v3;;;na 1
44394 Zonotrichia albicollis Passerellidae Passeriformes Chordata GCF_000385455.1 502 144378 0.3464936499171728 75.7 ["u11", "u12", "u6atac"] Zonotrichia_albicollis-1.0.1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/385/455/GCF_000385455.1_Zonotrichia_albicollis-1.0.1 GCF_000385455.1;PRJNA217032;SAMN02981528;ARWJ00000000.1;representative genome;44394;44394;Zonotrichia albicollis;;Tan morph;latest;Scaffold;Major;Full;2013/04/30;Zonotrichia_albicollis-1.0.1;White-throated sparrow consortium;GCA_000385455.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/385/455/GCF_000385455.1_Zonotrichia_albicollis-1.0.1;;;na 1

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CREATE TABLE "genomes" (
"taxonomy_id" INTEGER,
  "species" TEXT,
  "family" TEXT,
  "order" TEXT,
  "phylum" TEXT,
  "accession" TEXT,
  "n_minor_introns" INTEGER,
  "n_major_introns" INTEGER,
  "percent_minor_introns" REAL,
  "busco_score" REAL,
  "minor_snRNAs" TEXT,
  "genome_version" TEXT,
  "source_url" TEXT,
  "source_metadata" TEXT,
  "minor_intron+" INTEGER
  ,PRIMARY KEY ([taxonomy_id])
);
CREATE INDEX [idx_genomes_phylum]
    ON [genomes] ([phylum]);
CREATE INDEX [idx_genomes_order]
    ON [genomes] ([order]);
CREATE INDEX [idx_genomes_family]
    ON [genomes] ([family]);