WtMTA: genomes: 3 rows where minor_snRNAs = "["u11", "u12", "u4atac"]" sorted by percent_minor

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

taxonomy_id: INTEGER (primary key), unique identifier for each species
species: TEXT, binomial name of the species
family: TEXT, taxonomic family of the species
order: TEXT, taxonomic order of the species
phylum: TEXT, taxonomic phylum of the species
accession: TEXT, accession number of the genome assembly
n_minor_introns: INTEGER, total number of minor introns in the genome
n_major_introns: INTEGER, total number of major introns in the genome
percent_minor_introns: REAL, percentage of minor introns in the genome
busco_score: REAL, BUSCO score assessing the genome assembly completeness (vs. eukaryota_odb10)
minor_snRNAs: TEXT, minor snRNAs found in the annotated transcriptome
genome_version: TEXT, version of the genome assembly
source_url: TEXT, URL for the source genome/annotation files
source_metadata: TEXT, additional metadata from the original data source
minor_intron+: INTEGER, indicates if the species is inferred to contain real minor introns (1) or not (0)

3 rows where minor_snRNAs = "["u11", "u12", "u4atac"]" sorted by percent_minor_introns descending

Search:

descending

taxonomy_id	species	family	order	phylum	accession	n_minor_introns	n_major_introns	percent_minor_introns ▲	busco_score	minor_snRNAs	genome_version	source_url	source_metadata	minor_intron+
6500	Aplysia californica	Aplysiidae	Aplysiida	Mollusca	GCF_000002075.1	476	141803	0.3345539397943477	91.4	["u11", "u12", "u4atac"]	AplCal3.0	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/002/075/GCF_000002075.1_AplCal3.0	GCF_000002075.1;PRJNA209509;SAMN02953658;AASC00000000.3;representative genome;6500;6500;Aplysia californica;;F4 #8;latest;Scaffold;Major;Full;2013/05/15;AplCal3.0;Broad Institute;GCA_000002075.2;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/002/075/GCF_000002075.1_AplCal3.0;;;na	1
264402	Capsella grandiflora	Brassicaceae	Brassicales	Streptophyta	Cgrandiflora_v1_1	258	107885	0.2385730005640679	95.7	["u11", "u12", "u4atac"]	.		.	1
44941	Gigaspora rosea	Gigasporaceae	Diversisporales	Mucoromycota	GCA_003550325.1	190	90294	0.2099818752486627	92.9	["u11", "u12", "u4atac"]	ASM355032v1	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/550/325/GCA_003550325.1_ASM355032v1	GCA_003550325.1;PRJNA430513;SAMN08375202;QKWP00000000.1;representative genome;44941;44941;Gigaspora rosea;strain=DAOM 194757;;latest;Scaffold;Major;Full;2018/09/12;ASM355032v1;INRA;na;na;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/550/325/GCA_003550325.1_ASM355032v1;;;na	1

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CREATE TABLE "genomes" (
"taxonomy_id" INTEGER,
  "species" TEXT,
  "family" TEXT,
  "order" TEXT,
  "phylum" TEXT,
  "accession" TEXT,
  "n_minor_introns" INTEGER,
  "n_major_introns" INTEGER,
  "percent_minor_introns" REAL,
  "busco_score" REAL,
  "minor_snRNAs" TEXT,
  "genome_version" TEXT,
  "source_url" TEXT,
  "source_metadata" TEXT,
  "minor_intron+" INTEGER
  ,PRIMARY KEY ([taxonomy_id])
);
CREATE INDEX [idx_genomes_phylum]
    ON [genomes] ([phylum]);
CREATE INDEX [idx_genomes_order]
    ON [genomes] ([order]);
CREATE INDEX [idx_genomes_family]
    ON [genomes] ([family]);