WtMTA: genomes: 2 rows where minor_snRNAs = "["u11", "u12", "u4atac", "u6atac"]", minor_snRNAs contains "u6atac" and species = "Danaus plexippus" sorted by percent_minor

Data license: ODbL · Data source: Larue & Roy, 2023

taxonomy_id: INTEGER (primary key), unique identifier for each species
species: TEXT, binomial name of the species
family: TEXT, taxonomic family of the species
order: TEXT, taxonomic order of the species
phylum: TEXT, taxonomic phylum of the species
accession: TEXT, accession number of the genome assembly
n_minor_introns: INTEGER, total number of minor introns in the genome
n_major_introns: INTEGER, total number of major introns in the genome
percent_minor_introns: REAL, percentage of minor introns in the genome
busco_score: REAL, BUSCO score assessing the genome assembly completeness (vs. eukaryota_odb10)
minor_snRNAs: TEXT, minor snRNAs found in the annotated transcriptome
genome_version: TEXT, version of the genome assembly
source_url: TEXT, URL for the source genome/annotation files
source_metadata: TEXT, additional metadata from the original data source
minor_intron+: INTEGER, indicates if the species is inferred to contain real minor introns (1) or not (0)

2 rows where minor_snRNAs = "["u11", "u12", "u4atac", "u6atac"]", minor_snRNAs contains "u6atac" and species = "Danaus plexippus" sorted by percent_minor_introns descending

Search:

descending

taxonomy_id	species	family	order	phylum	accession	n_minor_introns	n_major_introns	percent_minor_introns ▲	busco_score	minor_snRNAs	genome_version	source_url	source_metadata	minor_intron+
13037	Danaus plexippus	Nymphalidae	Lepidoptera	Arthropoda	GCF_009731565.1	105	88289	0.1187863429644546	97.3	["u11", "u12", "u4atac", "u6atac"]	Dplex_v4	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/731/565/GCF_009731565.1_Dplex_v4	GCF_009731565.1;PRJNA607945;SAMN01758044;DUEA00000000.1;representative genome;278856;13037;Danaus plexippus plexippus;;F-2;latest;Chromosome;Major;Full;2019/12/11;Dplex_v4;Princeton University;GCA_009731565.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/731/565/GCF_009731565.1_Dplex_v4;;;na	1
278856	Danaus plexippus	Nymphalidae	Lepidoptera	Arthropoda	GCA_000235995.2	78	86064	0.0905481646583548	94.9	["u11", "u12", "u4atac", "u6atac"]	Dpv3	ftp://ftp.ensemblgenomes.org/pub/metazoa/release-52/fasta/danaus_plexippus/dna/Danaus_plexippus.Dpv3.dna.toplevel.fa.gz; ftp://ftp.ensemblgenomes.org/pub/metazoa/release-52/gtf/danaus_plexippus/Danaus_plexippus.Dpv3.52.gtf.gz	Danaus plexippus plexippus (F-2);danaus_plexippus;EnsemblMetazoa;278856;Dpv3;GCA_000235995.2;OGS2.0;N;N;N;Y;N;Y;danaus_plexippus_core_52_105_3;1	1

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CREATE TABLE "genomes" (
"taxonomy_id" INTEGER,
  "species" TEXT,
  "family" TEXT,
  "order" TEXT,
  "phylum" TEXT,
  "accession" TEXT,
  "n_minor_introns" INTEGER,
  "n_major_introns" INTEGER,
  "percent_minor_introns" REAL,
  "busco_score" REAL,
  "minor_snRNAs" TEXT,
  "genome_version" TEXT,
  "source_url" TEXT,
  "source_metadata" TEXT,
  "minor_intron+" INTEGER
  ,PRIMARY KEY ([taxonomy_id])
);
CREATE INDEX [idx_genomes_phylum]
    ON [genomes] ([phylum]);
CREATE INDEX [idx_genomes_order]
    ON [genomes] ([order]);
CREATE INDEX [idx_genomes_family]
    ON [genomes] ([family]);