WtMTA: genomes: 1 row where genome_version = "T_suis_1.0.allpaths" and minor_snRNAs contains "u4atac" sorted by percent_minor

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

taxonomy_id: INTEGER (primary key), unique identifier for each species
species: TEXT, binomial name of the species
family: TEXT, taxonomic family of the species
order: TEXT, taxonomic order of the species
phylum: TEXT, taxonomic phylum of the species
accession: TEXT, accession number of the genome assembly
n_minor_introns: INTEGER, total number of minor introns in the genome
n_major_introns: INTEGER, total number of major introns in the genome
percent_minor_introns: REAL, percentage of minor introns in the genome
busco_score: REAL, BUSCO score assessing the genome assembly completeness (vs. eukaryota_odb10)
minor_snRNAs: TEXT, minor snRNAs found in the annotated transcriptome
genome_version: TEXT, version of the genome assembly
source_url: TEXT, URL for the source genome/annotation files
source_metadata: TEXT, additional metadata from the original data source
minor_intron+: INTEGER, indicates if the species is inferred to contain real minor introns (1) or not (0)

1 row where genome_version = "T_suis_1.0.allpaths" and minor_snRNAs contains "u4atac" sorted by percent_minor_introns descending

Search:

descending

taxonomy_id	species	family	order	phylum	accession	n_minor_introns	n_major_introns	percent_minor_introns ▲	busco_score	minor_snRNAs	genome_version	source_url	source_metadata	minor_intron+
68888	Trichuris suis	Trichuridae	Trichinellida	Nematoda	GCA_000797535.1	4	51668	0.0077411363988233	83.5	["u11", "u12", "u4atac", "u6atac"]	T_suis_1.0.allpaths	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/797/535/GCA_000797535.1_T_suis_1.0.allpaths	GCA_000797535.1;PRJNA179528;SAMN02721381;JDFW00000000.1;representative genome;68888;68888;Trichuris suis;;;latest;Scaffold;Major;Full;2014/12/09;T_suis_1.0.allpaths;The Genome Institute;na;na;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/797/535/GCA_000797535.1_T_suis_1.0.allpaths;;;na	1

Advanced export

JSON shape: default, array, newline-delimited, object

CREATE TABLE "genomes" (
"taxonomy_id" INTEGER,
  "species" TEXT,
  "family" TEXT,
  "order" TEXT,
  "phylum" TEXT,
  "accession" TEXT,
  "n_minor_introns" INTEGER,
  "n_major_introns" INTEGER,
  "percent_minor_introns" REAL,
  "busco_score" REAL,
  "minor_snRNAs" TEXT,
  "genome_version" TEXT,
  "source_url" TEXT,
  "source_metadata" TEXT,
  "minor_intron+" INTEGER
  ,PRIMARY KEY ([taxonomy_id])
);
CREATE INDEX [idx_genomes_phylum]
    ON [genomes] ([phylum]);
CREATE INDEX [idx_genomes_order]
    ON [genomes] ([order]);
CREATE INDEX [idx_genomes_family]
    ON [genomes] ([family]);