WtMTA: genomes: 1 row where genome_version = "ASM638163v2" and minor_snRNAs contains "u12" sorted by percent_minor

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

taxonomy_id: INTEGER (primary key), unique identifier for each species
species: TEXT, binomial name of the species
family: TEXT, taxonomic family of the species
order: TEXT, taxonomic order of the species
phylum: TEXT, taxonomic phylum of the species
accession: TEXT, accession number of the genome assembly
n_minor_introns: INTEGER, total number of minor introns in the genome
n_major_introns: INTEGER, total number of major introns in the genome
percent_minor_introns: REAL, percentage of minor introns in the genome
busco_score: REAL, BUSCO score assessing the genome assembly completeness (vs. eukaryota_odb10)
minor_snRNAs: TEXT, minor snRNAs found in the annotated transcriptome
genome_version: TEXT, version of the genome assembly
source_url: TEXT, URL for the source genome/annotation files
source_metadata: TEXT, additional metadata from the original data source
minor_intron+: INTEGER, indicates if the species is inferred to contain real minor introns (1) or not (0)

1 row where genome_version = "ASM638163v2" and minor_snRNAs contains "u12" sorted by percent_minor_introns descending

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taxonomy_id	species	family	order	phylum	accession	n_minor_introns	n_major_introns	percent_minor_introns ▲	busco_score	minor_snRNAs	genome_version	source_url	source_metadata	minor_intron+
106335	Hibiscus syriacus	Malvaceae	Malvales	Streptophyta	GCF_006381635.1	1119	444779	0.2509542541119269	99.2	["u11", "u12", "u6atac"]	ASM638163v2	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/006/381/635/GCF_006381635.1_ASM638163v2	GCF_006381635.1;PRJNA691360;SAMN11494363;VEPZ00000000.2;representative genome;106335;106335;Hibiscus syriacus;cultivar=Baekdansim;YM2019G1;latest;Scaffold;Major;Full;2019/11/18;ASM638163v2;Korea Research Institute of Bioscience and Biotechnology;GCA_006381635.2;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/006/381/635/GCF_006381635.1_ASM638163v2;;;na	1

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CREATE TABLE "genomes" (
"taxonomy_id" INTEGER,
  "species" TEXT,
  "family" TEXT,
  "order" TEXT,
  "phylum" TEXT,
  "accession" TEXT,
  "n_minor_introns" INTEGER,
  "n_major_introns" INTEGER,
  "percent_minor_introns" REAL,
  "busco_score" REAL,
  "minor_snRNAs" TEXT,
  "genome_version" TEXT,
  "source_url" TEXT,
  "source_metadata" TEXT,
  "minor_intron+" INTEGER
  ,PRIMARY KEY ([taxonomy_id])
);
CREATE INDEX [idx_genomes_phylum]
    ON [genomes] ([phylum]);
CREATE INDEX [idx_genomes_order]
    ON [genomes] ([order]);
CREATE INDEX [idx_genomes_family]
    ON [genomes] ([family]);