WtMTA: genomes: 2 rows where family = "Pipridae", minor_snRNAs = "["u12", "u4atac", "u6atac"]" and minor_snRNAs contains "u12" sorted by percent_minor

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

taxonomy_id: INTEGER (primary key), unique identifier for each species
species: TEXT, binomial name of the species
family: TEXT, taxonomic family of the species
order: TEXT, taxonomic order of the species
phylum: TEXT, taxonomic phylum of the species
accession: TEXT, accession number of the genome assembly
n_minor_introns: INTEGER, total number of minor introns in the genome
n_major_introns: INTEGER, total number of major introns in the genome
percent_minor_introns: REAL, percentage of minor introns in the genome
busco_score: REAL, BUSCO score assessing the genome assembly completeness (vs. eukaryota_odb10)
minor_snRNAs: TEXT, minor snRNAs found in the annotated transcriptome
genome_version: TEXT, version of the genome assembly
source_url: TEXT, URL for the source genome/annotation files
source_metadata: TEXT, additional metadata from the original data source
minor_intron+: INTEGER, indicates if the species is inferred to contain real minor introns (1) or not (0)

2 rows where family = "Pipridae", minor_snRNAs = "["u12", "u4atac", "u6atac"]" and minor_snRNAs contains "u12" sorted by percent_minor_introns descending

Search:

descending

taxonomy_id	species	family	order	phylum	accession	n_minor_introns	n_major_introns	percent_minor_introns ▲	busco_score	minor_snRNAs	genome_version	source_url	source_metadata	minor_intron+
328815	Manacus vitellinus	Pipridae	Passeriformes	Chordata	GCF_001715985.3	519	149246	0.3465429172370046	87.5	["u12", "u4atac", "u6atac"]	ASM171598v3	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/715/985/GCF_001715985.3_ASM171598v3	GCF_001715985.3;PRJNA341382;SAMN02299332;MCBO00000000.3;representative genome;328815;328815;Manacus vitellinus;;BGI_N305;latest;Scaffold;Major;Full;2019/07/03;ASM171598v3;Smithsonian Institution National Museum of Natural History;GCA_001715985.3;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/715/985/GCF_001715985.3_ASM171598v3;;;na	1
321398	Lepidothrix coronata	Pipridae	Passeriformes	Chordata	GCF_001604755.1	554	162800	0.3391407617811623	94.9	["u12", "u4atac", "u6atac"]	Lepidothrix_coronata-1.0	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/604/755/GCF_001604755.1_Lepidothrix_coronata-1.0	GCF_001604755.1;PRJNA338288;SAMN04274560;LVWP00000000.1;representative genome;321398;321398;Lepidothrix coronata;;B3197;latest;Scaffold;Major;Full;2016/03/31;Lepidothrix_coronata-1.0;McDonnell Genome Institute;GCA_001604755.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/604/755/GCF_001604755.1_Lepidothrix_coronata-1.0;;;na	1

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CREATE TABLE "genomes" (
"taxonomy_id" INTEGER,
  "species" TEXT,
  "family" TEXT,
  "order" TEXT,
  "phylum" TEXT,
  "accession" TEXT,
  "n_minor_introns" INTEGER,
  "n_major_introns" INTEGER,
  "percent_minor_introns" REAL,
  "busco_score" REAL,
  "minor_snRNAs" TEXT,
  "genome_version" TEXT,
  "source_url" TEXT,
  "source_metadata" TEXT,
  "minor_intron+" INTEGER
  ,PRIMARY KEY ([taxonomy_id])
);
CREATE INDEX [idx_genomes_phylum]
    ON [genomes] ([phylum]);
CREATE INDEX [idx_genomes_order]
    ON [genomes] ([order]);
CREATE INDEX [idx_genomes_family]
    ON [genomes] ([family]);