WtMTA: genomes: 1 row where family = "Pipidae", genome_version = "UCB_Hboe_1.0" and minor_snRNAs contains "u4atac" sorted by percent_minor

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

taxonomy_id: INTEGER (primary key), unique identifier for each species
species: TEXT, binomial name of the species
family: TEXT, taxonomic family of the species
order: TEXT, taxonomic order of the species
phylum: TEXT, taxonomic phylum of the species
accession: TEXT, accession number of the genome assembly
n_minor_introns: INTEGER, total number of minor introns in the genome
n_major_introns: INTEGER, total number of major introns in the genome
percent_minor_introns: REAL, percentage of minor introns in the genome
busco_score: REAL, BUSCO score assessing the genome assembly completeness (vs. eukaryota_odb10)
minor_snRNAs: TEXT, minor snRNAs found in the annotated transcriptome
genome_version: TEXT, version of the genome assembly
source_url: TEXT, URL for the source genome/annotation files
source_metadata: TEXT, additional metadata from the original data source
minor_intron+: INTEGER, indicates if the species is inferred to contain real minor introns (1) or not (0)

1 row where family = "Pipidae", genome_version = "UCB_Hboe_1.0" and minor_snRNAs contains "u4atac" sorted by percent_minor_introns descending

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taxonomy_id	species	family	order	phylum	accession	n_minor_introns	n_major_introns	percent_minor_introns ▲	busco_score	minor_snRNAs	genome_version	source_url	source_metadata	minor_intron+
247094	Hymenochirus boettgeri	Pipidae	Anura	Chordata	GCA_019447015.1	521	154898	0.3352228492011916	93.3	["u11", "u12", "u4atac", "u6atac"]	UCB_Hboe_1.0	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/447/015/GCA_019447015.1_UCB_Hboe_1.0	GCA_019447015.1;PRJNA578589;SAMN13066281;JAACNH000000000.1;representative genome;247094;247094;Hymenochirus boettgeri;;Female2;latest;Chromosome;Major;Full;2021/08/05;UCB_Hboe_1.0;University of California, Berkeley;na;na;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/447/015/GCA_019447015.1_UCB_Hboe_1.0;;;na	1

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CREATE TABLE "genomes" (
"taxonomy_id" INTEGER,
  "species" TEXT,
  "family" TEXT,
  "order" TEXT,
  "phylum" TEXT,
  "accession" TEXT,
  "n_minor_introns" INTEGER,
  "n_major_introns" INTEGER,
  "percent_minor_introns" REAL,
  "busco_score" REAL,
  "minor_snRNAs" TEXT,
  "genome_version" TEXT,
  "source_url" TEXT,
  "source_metadata" TEXT,
  "minor_intron+" INTEGER
  ,PRIMARY KEY ([taxonomy_id])
);
CREATE INDEX [idx_genomes_phylum]
    ON [genomes] ([phylum]);
CREATE INDEX [idx_genomes_order]
    ON [genomes] ([order]);
CREATE INDEX [idx_genomes_family]
    ON [genomes] ([family]);