WtMTA: genomes: 2 rows where family = "Gobiidae" and minor_snRNAs contains "u12" sorted by percent_minor

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

taxonomy_id: INTEGER (primary key), unique identifier for each species
species: TEXT, binomial name of the species
family: TEXT, taxonomic family of the species
order: TEXT, taxonomic order of the species
phylum: TEXT, taxonomic phylum of the species
accession: TEXT, accession number of the genome assembly
n_minor_introns: INTEGER, total number of minor introns in the genome
n_major_introns: INTEGER, total number of major introns in the genome
percent_minor_introns: REAL, percentage of minor introns in the genome
busco_score: REAL, BUSCO score assessing the genome assembly completeness (vs. eukaryota_odb10)
minor_snRNAs: TEXT, minor snRNAs found in the annotated transcriptome
genome_version: TEXT, version of the genome assembly
source_url: TEXT, URL for the source genome/annotation files
source_metadata: TEXT, additional metadata from the original data source
minor_intron+: INTEGER, indicates if the species is inferred to contain real minor introns (1) or not (0)

2 rows where family = "Gobiidae" and minor_snRNAs contains "u12" sorted by percent_minor_introns descending

Search:

descending

taxonomy_id	species	family	order	phylum	accession	n_minor_introns	n_major_introns	percent_minor_introns ▲	busco_score	minor_snRNAs	genome_version	source_url	source_metadata	minor_intron+
150288	Boleophthalmus pectinirostris	Gobiidae	Gobiiformes	Chordata	GCF_000788275.1	677	209971	0.3213892370210018	98.8	["u11", "u12", "u4atac", "u6atac"]	BP.fa	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/788/275/GCF_000788275.1_BP.fa	GCF_000788275.1;PRJNA384419;SAMN03201692;JACK00000000.1;representative genome;150288;150288;Boleophthalmus pectinirostris;;;latest;Scaffold;Major;Full;2014/12/02;BP.fa;BGI-shenzhen;GCA_000788275.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/788/275/GCF_000788275.1_BP.fa;;;na	1
409849	Periophthalmus magnuspinnatus	Gobiidae	Gobiiformes	Chordata	GCF_009829125.1	687	215696	0.3174925941501874	98.8	["u11", "u12", "u4atac", "u6atac"]	fPerMag1.pri	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/829/125/GCF_009829125.1_fPerMag1.pri	GCF_009829125.1;PRJNA627707;SAMN12629500;WNMA00000000.1;representative genome;409849;409849;Periophthalmus magnuspinnatus;;fPerMag1;latest;Chromosome;Major;Full;2020/01/03;fPerMag1.pri;Vertebrate Genomes Project;GCA_009829125.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/829/125/GCF_009829125.1_fPerMag1.pri;;;na	1

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CREATE TABLE "genomes" (
"taxonomy_id" INTEGER,
  "species" TEXT,
  "family" TEXT,
  "order" TEXT,
  "phylum" TEXT,
  "accession" TEXT,
  "n_minor_introns" INTEGER,
  "n_major_introns" INTEGER,
  "percent_minor_introns" REAL,
  "busco_score" REAL,
  "minor_snRNAs" TEXT,
  "genome_version" TEXT,
  "source_url" TEXT,
  "source_metadata" TEXT,
  "minor_intron+" INTEGER
  ,PRIMARY KEY ([taxonomy_id])
);
CREATE INDEX [idx_genomes_phylum]
    ON [genomes] ([phylum]);
CREATE INDEX [idx_genomes_order]
    ON [genomes] ([order]);
CREATE INDEX [idx_genomes_family]
    ON [genomes] ([family]);