WtMTA: genomes: 2 rows where family = "Gasterosteidae", minor_snRNAs = "["u11", "u12", "u4atac", "u6atac"]" and minor_snRNAs contains "u4atac" sorted by percent_minor

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

taxonomy_id: INTEGER (primary key), unique identifier for each species
species: TEXT, binomial name of the species
family: TEXT, taxonomic family of the species
order: TEXT, taxonomic order of the species
phylum: TEXT, taxonomic phylum of the species
accession: TEXT, accession number of the genome assembly
n_minor_introns: INTEGER, total number of minor introns in the genome
n_major_introns: INTEGER, total number of major introns in the genome
percent_minor_introns: REAL, percentage of minor introns in the genome
busco_score: REAL, BUSCO score assessing the genome assembly completeness (vs. eukaryota_odb10)
minor_snRNAs: TEXT, minor snRNAs found in the annotated transcriptome
genome_version: TEXT, version of the genome assembly
source_url: TEXT, URL for the source genome/annotation files
source_metadata: TEXT, additional metadata from the original data source
minor_intron+: INTEGER, indicates if the species is inferred to contain real minor introns (1) or not (0)

2 rows where family = "Gasterosteidae", minor_snRNAs = "["u11", "u12", "u4atac", "u6atac"]" and minor_snRNAs contains "u4atac" sorted by percent_minor_introns descending

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taxonomy_id	species	family	order	phylum	accession	n_minor_introns	n_major_introns	percent_minor_introns ▲	busco_score	minor_snRNAs	genome_version	source_url	source_metadata	minor_intron+
69293	Gasterosteus aculeatus	Gasterosteidae	Perciformes	Chordata	GCF_016920845.1	725	228194	0.3167059090770098	98.8	["u11", "u12", "u4atac", "u6atac"]	GAculeatus_UGA_version5	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/920/845/GCF_016920845.1_GAculeatus_UGA_version5	GCF_016920845.1;PRJNA707557;SAMN15223905;JACDQR000000000.1;representative genome;481459;69293;Gasterosteus aculeatus aculeatus;strain=Lake Benthic;;latest;Chromosome;Major;Full;2021/02/23;GAculeatus_UGA_version5;University of Georgia;GCA_016920845.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/920/845/GCF_016920845.1_GAculeatus_UGA_version5;;;na	1
134920	Pungitius pungitius	Gasterosteidae	Perciformes	Chordata	GCF_902500615.1	714	227492	0.3128752092407736	99.2	["u11", "u12", "u4atac", "u6atac"]	NSP_V7	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/902/500/615/GCF_902500615.1_NSP_V7	GCF_902500615.1;PRJNA675029;SAMEA5986199;CABVRH000000000.3;representative genome;134920;134920;Pungitius pungitius;;;latest;Scaffold;Major;Full;2020/10/12;NSP_V7;UNIVERSITY OF OSLO;GCA_902500615.3;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/902/500/615/GCF_902500615.1_NSP_V7;;;na	1

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CREATE TABLE "genomes" (
"taxonomy_id" INTEGER,
  "species" TEXT,
  "family" TEXT,
  "order" TEXT,
  "phylum" TEXT,
  "accession" TEXT,
  "n_minor_introns" INTEGER,
  "n_major_introns" INTEGER,
  "percent_minor_introns" REAL,
  "busco_score" REAL,
  "minor_snRNAs" TEXT,
  "genome_version" TEXT,
  "source_url" TEXT,
  "source_metadata" TEXT,
  "minor_intron+" INTEGER
  ,PRIMARY KEY ([taxonomy_id])
);
CREATE INDEX [idx_genomes_phylum]
    ON [genomes] ([phylum]);
CREATE INDEX [idx_genomes_order]
    ON [genomes] ([order]);
CREATE INDEX [idx_genomes_family]
    ON [genomes] ([family]);