WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 8980484

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
48347919	GT-AG	1.000000099473604e-05	2176	rna-XM_010209301.1 8980484	1	158763	160938	Colius striatus 57412	CAG\|GTAGGTGATA...TTAATATTAGCT/TATTAGCTAATG...TTTAG\|GAC	2	1	5.004
48347920	GT-AG	1.9958507644292875e-05	20172	rna-XM_010209301.1 8980484	2	138457	158628	Colius striatus 57412	AAG\|GTAAGTTTTT...ACATTTTTATTG/TTTTGTTTCAAT...CACAG\|GTC	1	1	14.864
48347921	GT-AG	1.000000099473604e-05	8307	rna-XM_010209301.1 8980484	3	130082	138388	Colius striatus 57412	ATG\|GTAAGTGCTA...AAGTGCTTAGTA/ACCTTTTTTACA...TATAG\|GAC	0	1	19.868
48347922	GT-AG	7.323976153880026e-05	12845	rna-XM_010209301.1 8980484	4	117013	129857	Colius striatus 57412	CAG\|GTAAACTAGG...GTTTTCTTTTTT/TTCCCTTCCAAT...TTTAG\|GCT	2	1	36.35
48347923	GT-AG	1.000000099473604e-05	1174	rna-XM_010209301.1 8980484	5	115756	116929	Colius striatus 57412	GCT\|GTGAGTGTCC...AAAGCCTGATTT/CAAAGCCTGATT...TGCAG\|TTG	1	1	42.458
48347924	GT-AG	1.000000099473604e-05	2658	rna-XM_010209301.1 8980484	6	112960	115617	Colius striatus 57412	CTG\|GTAAGCATGA...GCATTTATGAAA/AATAATTTCATG...TCTAG\|GAA	1	1	52.612
48347925	GT-AG	1.000000099473604e-05	52169	rna-XM_010209301.1 8980484	7	60576	112744	Colius striatus 57412	AAA\|GTAAGGAAAT...TGTGTCCTATTT/AGAAGTTTGAAA...TCTAG\|GTC	0	1	68.433
48347926	GT-AG	4.45149343147129e-05	27555	rna-XM_010209301.1 8980484	8	32871	60425	Colius striatus 57412	AAG\|GTACAGTGGC...TCTTCTTTATCC/GTCTTCTTTATC...TCCAG\|GAA	0	1	79.47

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);