introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 6866768

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id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
35746291 GT-AG 0 1.000000099473604e-05 951 gene-LOC103261730 6866768 1 6743 7693 Carlito syrichta 1868482 CCT|GTTGAGGCTT...GGCTTCTGGAGA/GGCTTCTGGAGA...CAGAG|ACT   0 32.723
35746292 GT-AG 0 1.000000099473604e-05 57 gene-LOC103261730 6866768 2 6676 6732 Carlito syrichta 1868482 CAG|GTTAGACTCA...GTGTTCTGAAGG/TGTGTTCTGAAG...TCCAG|GAT   0 34.031
35746293 GT-AG 0 1.000000099473604e-05 194 gene-LOC103261730 6866768 3 6415 6608 Carlito syrichta 1868482 AGG|GTAAGGATCC...AGCCCCGAGATT/CCGAGATTCAGA...CTCAG|GCC   0 42.801
35746294 GT-AG 0 1.000000099473604e-05 721 gene-LOC103261730 6866768 4 5564 6284 Carlito syrichta 1868482 ATG|GTGAGTGCAG...ATATTTTTGGTC/TCCTGGGTAACT...CCTAG|GGA   0 59.817
35746295 GT-AG 0 0.0812451443539701 93 gene-LOC103261730 6866768 5 5338 5430 Carlito syrichta 1868482 AAG|GTACCCACCC...TGCCCCTTTTCT/CTTGCCCTGAGT...CACAG|GTA   0 77.225
35746296 GT-AG 0 1.000000099473604e-05 168 gene-LOC103261730 6866768 6 5105 5272 Carlito syrichta 1868482 GAG|GTGCTGTCCA...CTGTCTCTGCCT/GGAGACCCCACC...TCCAG|GCC   0 85.733
35746297 GT-AG 0 1.000000099473604e-05 2870 gene-LOC103261730 6866768 7 2166 5035 Carlito syrichta 1868482 CAA|GTGAGAATGG...TCTGCCTTGGTT/TGGATCCTCAGC...TACAG|GGA   0 94.764

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);