WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 5460277

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
28028520	GT-AG	0.0033485364967438	901	rna-XM_010132765.1 5460277	1	152296	153196	Buceros rhinoceros 175835	AAG\|GTATTTTATT...TGTGTATTGACC/TGTGTATTGACC...CCCAG\|GTG	1	1	15.268
28028521	GT-AG	1.000000099473604e-05	116	rna-XM_010132765.1 5460277	2	151955	152070	Buceros rhinoceros 175835	CAG\|GTAAAGAACT...ACTGCTTTATGT/GCCTGCCTCATG...TTTAG\|GAG	1	1	32.275
28028522	GT-AG	1.000000099473604e-05	2689	rna-XM_010132765.1 5460277	3	149170	151858	Buceros rhinoceros 175835	CAG\|GTACGTAAAG...TTTGTTTTATTT/TTTTGTTTTATT...TTTAG\|CTG	1	1	39.531
28028523	GT-AG	2.743653737566956e-05	1377	rna-XM_010132765.1 5460277	4	147665	149041	Buceros rhinoceros 175835	GAG\|GTATTGGATG...TTTTTCTTTCCT/TTCTTTCCTATC...GACAG\|CGG	0	1	49.206
28028524	GT-AG	1.000000099473604e-05	1070	rna-XM_010132765.1 5460277	5	146472	147541	Buceros rhinoceros 175835	AAC\|GTAAGGAACT...TTGTTCTTCCTC/TCCGCTGTGAAG...TACAG\|GTT	0	1	58.503
28028525	GT-AG	1.000000099473604e-05	1039	rna-XM_010132765.1 5460277	6	145304	146342	Buceros rhinoceros 175835	CCC\|GTGAGTAACC...AATGCCTTGGCC/TTTTCTGTTATG...TTCAG\|GTC	0	1	68.254
28028526	GT-AG	1.000000099473604e-05	743	rna-XM_010132765.1 5460277	7	144447	145189	Buceros rhinoceros 175835	GAG\|GTTTGTGTGT...TAGATCTGACTT/GTAGATCTGACT...TGCAG\|GTC	0	1	76.871
28028527	GT-AG	1.000000099473604e-05	598	rna-XM_010132765.1 5460277	8	143704	144301	Buceros rhinoceros 175835	AAG\|GTAAGGAAAT...TTTTCCTTTAAC/TTTTCCTTTAAC...TCTAG\|ACT	1	1	87.831

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);