WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 3682605

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
18436518	GT-AG	1.000000099473604e-05	13761	rna-XM_033781825.1 3682605	1	10833465	10847225	Asterias rubens 7604	ACG\|GTAAGTCAAG...GTATCCTCATTT/TGTATCCTCATT...TGCAG\|GTG	1	1	19.637
18436519	GT-AG	0.0002711125880757	1290	rna-XM_033781825.1 3682605	2	10849113	10850402	Asterias rubens 7604	ATG\|GTAACTCCAC...TGATTGTTATTG/ATGATTGTTATT...AACAG\|CCA	1	1	66.542
18436520	GT-AG	1.000000099473604e-05	423	rna-XM_033781825.1 3682605	3	10850604	10851026	Asterias rubens 7604	CAA\|GTGAGTATTG...TAACCATTTACA/ACTTGTTTCACT...ATCAG\|CAT	1	1	71.539
18436521	GT-AG	1.000000099473604e-05	1061	rna-XM_033781825.1 3682605	4	10851267	10852327	Asterias rubens 7604	CAG\|GTGATTATAC...TAATTCTTGATC/TAATTCTTGATC...TGCAG\|GAG	1	1	77.504
18436522	GT-AG	1.000000099473604e-05	790	rna-XM_033781825.1 3682605	5	10852474	10853263	Asterias rubens 7604	GAG\|GTAGGTCTAC...AAAGTTTTAAAT/GTTTCCCTCACT...TAAAG\|ATT	0	1	81.133
18436523	GT-AG	0.0002160392609442	1338	rna-XM_033781825.1 3682605	6	10853432	10854769	Asterias rubens 7604	ACG\|GTAACAAAAC...GTGCCTTTAACT/TTAACTCTCACA...TTCAG\|CTT	0	1	85.309
18436524	GT-AG	1.000000099473604e-05	793	rna-XM_033781825.1 3682605	7	10854906	10855698	Asterias rubens 7604	TGG\|GTGAGAAATT...CATCTATTAACT/CATCTATTAACT...TGCAG\|ATA	1	1	88.69
18436525	GT-AG	1.0020114098837031e-05	584	rna-XM_033781825.1 3682605	8	10855886	10856469	Asterias rubens 7604	AAG\|GTAGTTATTC...CATTCTTTGTTC/CATTTCATCATT...CTTAG\|GTG	2	1	93.338

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);