WtMTA: introns: 7 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 2065710

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
11204044	GT-AG	1.000000099473604e-05	1174	rna-XM_010168396.1 2065710	1	510	1683	Antrostomus carolinensis 279965	CAG\|GTGAGCTCTG...CACCCCTTGTTT/CAGGATGGGACC...GGCAG\|GTC	0	1	12.197
11204045	GT-AG	1.000000099473604e-05	313	rna-XM_010168396.1 2065710	2	1912	2224	Antrostomus carolinensis 279965	GGG\|GTGCGTCTGG...TGTTCCTGCTCC/CCTGCTCCAACC...TGCAG\|CCA	0	1	29.47
11204046	GT-AG	1.000000099473604e-05	83	rna-XM_010168396.1 2065710	3	2417	2499	Antrostomus carolinensis 279965	CAG\|GTAGGGTTGG...GGTTTCTGGATG/GATGGTGTCACC...TTCAG\|GGC	0	1	44.015
11204047	GT-AG	4.203609613282653e-05	353	rna-XM_010168396.1 2065710	4	2679	3031	Antrostomus carolinensis 279965	AAG\|GTAACGGTGC...ATCTCTTTACTC/GATCTCTTTACT...GGCAG\|GTT	2	1	57.576
11204048	GT-AG	1.000000099473604e-05	289	rna-XM_010168396.1 2065710	5	3184	3472	Antrostomus carolinensis 279965	CTG\|GTGAGTGGAG...CCCCCCTTGCAC/GCTCTGCTCACG...TTCAG\|GAG	1	1	69.091
11204049	GT-AG	1.000000099473604e-05	198	rna-XM_010168396.1 2065710	6	3582	3779	Antrostomus carolinensis 279965	CGC\|GTGAGTGTGT...GCTTCGTTAACT/ACGTTGGTCACT...CCCAG\|GTA	2	1	77.348
11204050	GT-AG	1.000000099473604e-05	223	rna-XM_010168396.1 2065710	7	3889	4111	Antrostomus carolinensis 279965	AAG\|GTGGGTGAGG...GAGCCTCTATTC/CTGGGGTTTATT...TGTAG\|GAT	0	1	85.606

Advanced export

JSON shape: default, array, newline-delimited, object

CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);