WtMTA: genomes: 1,575 rows sorted by percent_minor

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

taxonomy_id: INTEGER (primary key), unique identifier for each species
species: TEXT, binomial name of the species
family: TEXT, taxonomic family of the species
order: TEXT, taxonomic order of the species
phylum: TEXT, taxonomic phylum of the species
accession: TEXT, accession number of the genome assembly
n_minor_introns: INTEGER, total number of minor introns in the genome
n_major_introns: INTEGER, total number of major introns in the genome
percent_minor_introns: REAL, percentage of minor introns in the genome
busco_score: REAL, BUSCO score assessing the genome assembly completeness (vs. eukaryota_odb10)
minor_snRNAs: TEXT, minor snRNAs found in the annotated transcriptome
genome_version: TEXT, version of the genome assembly
source_url: TEXT, URL for the source genome/annotation files
source_metadata: TEXT, additional metadata from the original data source
minor_intron+: INTEGER, indicates if the species is inferred to contain real minor introns (1) or not (0)

1,575 rows sorted by percent_minor_introns descending

Search:

descending

taxonomy_id	species	family	order	phylum	accession	n_minor_introns	n_major_introns	percent_minor_introns ▲	busco_score	minor_snRNAs	genome_version	source_url	source_metadata	minor_intron+
5791	Physarum polycephalum	Physaraceae	Physariida	Evosea	GCA_000413255.3	20295	159710	11.27468681425516	66.3	["u11", "u12", "u6atac"]	Physarum_polycephalum-10.0	ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/413/255/GCA_000413255.3_Physarum_polycephalum-10.0	GCA_000413255.3;PRJNA12851;SAMN02839457;ATCM00000000.3;representative genome;5791;5791;Physarum polycephalum;strain=LU352;;latest;Scaffold;Major;Full;2014/06/30;Physarum_polycephalum-10.0;WUGSC;na;na;ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/413/255/GCA_000413255.3_Physarum_polycephalum-10.0;;;na	1
944036	Blastocystis sp. subtype 1	Blastocystidae	Opalinata		GCA_001651215.1	253	35751	0.7026997000333296	66.7	["u11", "u12", "u4atac", "u6atac"]	ASM165121v1	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/651/215/GCA_001651215.1_ASM165121v1	GCA_001651215.1;PRJNA308101;SAMN04386717;LXWW00000000.1;representative genome;478820;944036;Blastocystis sp. ATCC 50177/Nand II;strain=NandII;;latest;Scaffold;Major;Full;2016/05/24;ASM165121v1;Dalhousie University;na;na;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/651/215/GCA_001651215.1_ASM165121v1;;;na	1
423460	Basidiobolus meristosporus	Basidiobolaceae	Basidiobolales	Zoopagomycota	GCA_002104905.1	249	44710	0.5538379412353477	96.5	["u11", "u12", "u4atac", "u6atac"]	Basme2finSC	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/104/905/GCA_002104905.1_Basme2finSC	GCA_002104905.1;PRJNA196075;SAMN02745972;MCFE00000000.1;representative genome;1314790;423460;Basidiobolus meristosporus CBS 931.73;strain=CBS 931.73;;latest;Contig;Major;Full;2017/04/20;Basme2finSC;DOE Joint Genome Institute;na;na;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/104/905/GCA_002104905.1_Basme2finSC;;;na	1
46731	Pocillopora damicornis	Pocilloporidae	Scleractinia	Cnidaria	GCF_003704095.1	633	144761	0.4353687222306284	88.6	["u11", "u12", "u4atac", "u6atac"]	ASM370409v1	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/704/095/GCF_003704095.1_ASM370409v1	GCF_003704095.1;PRJNA506040;SAMN09007954;RCHS00000000.1;representative genome;46731;46731;Pocillopora damicornis;;RSMAS;latest;Scaffold;Major;Full;2018/10/31;ASM370409v1;University of Miami;GCA_003704095.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/704/095/GCF_003704095.1_ASM370409v1;;;na	1
48498	Orbicella faveolata	Merulinidae	Scleractinia	Cnidaria	GCF_002042975.1	658	153770	0.4260885331675602	87.1	["u11", "u12", "u4atac", "u6atac"]	ofav_dov_v1	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/042/975/GCF_002042975.1_ofav_dov_v1	GCF_002042975.1;PRJNA381078;SAMN06562666;MZGG00000000.1;representative genome;48498;48498;Orbicella faveolata;;FL;latest;Scaffold;Major;Full;2017/03/20;ofav_dov_v1;Smithsonian Tropical Research Institute;GCA_002042975.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/042/975/GCF_002042975.1_ofav_dov_v1;;;na	1
37653	Octopus bimaculoides	Octopodidae	Octopoda	Mollusca	GCF_001194135.1	505	118177	0.4255068165349421	92.2	["u11", "u12", "u4atac", "u6atac"]	Octopus_bimaculoides_v2_0	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/194/135/GCF_001194135.1_Octopus_bimaculoides_v2_0	GCF_001194135.1;PRJNA305125;SAMN03271701;LGKD00000000.1;representative genome;37653;37653;Octopus bimaculoides;;UCB-OBI-ISO-001;latest;Scaffold;Major;Full;2015/08/18;Octopus_bimaculoides_v2_0;Vincent J. Coates Genomic Sequencing Laboratory at UC Berkeley;GCA_001194135.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/194/135/GCF_001194135.1_Octopus_bimaculoides_v2_0;;;na	1
7604	Asterias rubens	Asteriidae	Forcipulatida	Echinodermata	GCF_902459465.1	605	144606	0.4166351034012574	99.2	["u11", "u12", "u4atac", "u6atac"]	eAstRub1.3	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/902/459/465/GCF_902459465.1_eAstRub1.3	GCF_902459465.1;PRJNA626669;SAMEA994741;CABPRM000000000.3;representative genome;7604;7604;Asterias rubens;;;latest;Chromosome;Major;Full;2020/02/12;eAstRub1.3;SC;GCA_902459465.3;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/902/459/465/GCF_902459465.1_eAstRub1.3;;;na	1
45351	Nematostella vectensis	Edwardsiidae	Actiniaria	Cnidaria	GCF_000209225.1	682	163077	0.4164656599026618	93.7	["u11", "u12", "u4atac", "u6atac"]	ASM20922v1	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/209/225/GCF_000209225.1_ASM20922v1	GCF_000209225.1;PRJNA19965;SAMN02953687;ABAV00000000.1;representative genome;45351;45351;Nematostella vectensis;strain=CH2 x CH6;;latest;Scaffold;Major;Full;2007/08/22;ASM20922v1;DOE Joint Genome Institute (JGI);GCA_000209225.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/209/225/GCF_000209225.1_ASM20922v1;;;na	1
6105	Actinia tenebrosa	Actiniidae	Actiniaria	Cnidaria	GCF_009602425.1	609	146062	0.4152150050112156	95.3	["u11", "u12", "u4atac", "u6atac"]	ASM960242v1	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/602/425/GCF_009602425.1_ASM960242v1	GCF_009602425.1;PRJNA590223;SAMN10439458;WAHB00000000.1;representative genome;6105;6105;Actinia tenebrosa;;;latest;Scaffold;Major;Full;2019/11/06;ASM960242v1;QUT;GCA_009602425.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/602/425/GCF_009602425.1_ASM960242v1;;;na	1
2652724	Exaiptasia diaphana	Aiptasiidae	Actiniaria	Cnidaria	GCF_001417965.1	590	142729	0.4116690738841326	93.3	["u11", "u12", "u4atac", "u6atac"]	Aiptasia genome 1.1	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/417/965/GCF_001417965.1_Aiptasia_genome_1.1	GCF_001417965.1;PRJNA386175;SAMN03839803;LJWW00000000.1;representative genome;2652724;2652724;Exaiptasia diaphana;;CC7;latest;Scaffold;Major;Full;2015/10/28;Aiptasia genome 1.1;KAUST;GCA_001417965.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/417/965/GCF_001417965.1_Aiptasia_genome_1.1;;;na	1
9915	Bos indicus	Bovidae	Artiodactyla	Chordata	GCF_000247795.1	688	171989	0.398431754084215	93.7	["u11", "u12", "u4atac", "u6atac"]	Bos_indicus_1.0	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/247/795/GCF_000247795.1_Bos_indicus_1.0	GCF_000247795.1;PRJNA360096;SAMN02953802;AGFL00000000.1;representative genome;9915;9915;Bos indicus;breed=Nelore;QUIL7308;latest;Chromosome;Major;Full;2014/11/25;Bos_indicus_1.0;Genoa Biotecnologia SA ;GCA_000247795.2;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/247/795/GCF_000247795.1_Bos_indicus_1.0;;;na	1
133434	Acanthaster planci	Acanthasteridae	Valvatida	Echinodermata	GCF_001949145.1	602	151442	0.3959380179421746	99.6	["u11", "u12", "u4atac", "u6atac"]	OKI-Apl_1.0	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/949/145/GCF_001949145.1_OKI-Apl_1.0	GCF_001949145.1;PRJNA397419;SAMD00054104;BDGF00000000.1;representative genome;133434;133434;Acanthaster planci;;;latest;Scaffold;Major;Full;2016/12/20;OKI-Apl_1.0;Okinawa Institute of Science and Technology;GCA_001949145.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/949/145/GCF_001949145.1_OKI-Apl_1.0;;;na	1
50429	Stylophora pistillata	Pocilloporidae	Scleractinia	Cnidaria	GCF_002571385.1	637	165556	0.383289308213944	90.6	["u11", "u12", "u4atac", "u6atac"]	Stylophora pistillata v1	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/571/385/GCF_002571385.1_Stylophora_pistillata_v1	GCF_002571385.1;PRJNA415215;SAMN03491624;LSMT00000000.1;representative genome;50429;50429;Stylophora pistillata;;CSM Monaco;latest;Scaffold;Major;Full;2017/10/17;Stylophora pistillata v1;KAUST;GCA_002571385.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/571/385/GCF_002571385.1_Stylophora_pistillata_v1;;;na	1
187382	Chlamydotis macqueenii	Otididae	Gruiformes	Chordata	GCF_000695195.1	433	112937	0.381935256240628	60.0	["u12", "u6atac"]	ASM69519v1	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/695/195/GCF_000695195.1_ASM69519v1	GCF_000695195.1;PRJNA266006;SAMN02324157;JMFJ00000000.1;representative genome;187382;187382;Chlamydotis macqueenii;;BGI_N324;latest;Scaffold;Major;Full;2014/06/02;ASM69519v1;BGI;GCA_000695195.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/695/195/GCF_000695195.1_ASM69519v1;;;na	1
36300	Pelecanus crispus	Pelecanidae	Pelecaniformes	Chordata	GCF_000687375.1	436	114858	0.3781636511873991	59.2	["u11", "u6atac"]	ASM68737v1	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/687/375/GCF_000687375.1_ASM68737v1	GCF_000687375.1;PRJNA253833;SAMN02339887;JJRG00000000.1;representative genome;36300;36300;Pelecanus crispus;;BGI_N334;latest;Scaffold;Major;Full;2014/05/09;ASM68737v1;BGI;GCA_000687375.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/687/375/GCF_000687375.1_ASM68737v1;;;na	1
925459	Balearica regulorum	Gruidae	Gruiformes	Chordata	GCF_000709895.1	450	118975	0.376805526481055	60.8	["u12", "u6atac"]	ASM70989v1	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/709/895/GCF_000709895.1_ASM70989v1	GCF_000709895.1;PRJNA264996;SAMN02318095;JJRR00000000.1;representative genome;100784;925459;Balearica regulorum gibbericeps;;BGI_N312;latest;Scaffold;Major;Full;2014/06/25;ASM70989v1;BGI;GCA_000709895.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/709/895/GCF_000709895.1_ASM70989v1;;;na	1
151771	Dendronephthya gigantea	Nephtheidae	Alcyonacea	Cnidaria	GCF_004324835.1	638	169687	0.3745780126229268	98.0	["u11", "u12", "u4atac", "u6atac"]	DenGig_1.0	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/324/835/GCF_004324835.1_DenGig_1.0	GCF_004324835.1;PRJNA529494;SAMN10516674;RSEI00000000.1;representative genome;151771;151771;Dendronephthya gigantea;;DGI-Jeju-01;latest;Contig;Major;Full;2019/03/04;DenGig_1.0;Ulsan National Institute of Science and Technology;GCA_004324835.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/324/835/GCF_004324835.1_DenGig_1.0;;;na	1
1529436	Anneissia japonica	Comatulidae	Comatulida	Echinodermata	GCF_011630105.1	583	155652	0.373155822959004	92.9	["u11", "u12", "u4atac", "u6atac"]	ASM1163010v1	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/011/630/105/GCF_011630105.1_ASM1163010v1	GCF_011630105.1;PRJNA615663;SAMN12241982;VUNX00000000.1;representative genome;1529436;1529436;Anneissia japonica;;Jap-2015-1;latest;Scaffold;Major;Full;2020/03/23;ASM1163010v1;Center for Ecological and Environmental Sciences;GCA_011630105.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/011/630/105/GCF_011630105.1_ASM1163010v1;;;na	1
37040	Gavia stellata	Gaviidae	Gaviiformes	Chordata	GCF_000690875.1	420	112258	0.3727435701734145	61.6	["u12", "u6atac"]	ASM69087v1	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/690/875/GCF_000690875.1_ASM69087v1	GCF_000690875.1;PRJNA261843;SAMN02324832;JJRM00000000.1;representative genome;37040;37040;Gavia stellata;;BGI_N328;latest;Scaffold;Major;Full;2014/05/13;ASM69087v1;BGI;GCA_000690875.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/690/875/GCF_000690875.1_ASM69087v1;;;na	1
2607531	Octopus sinensis	Octopodidae	Octopoda	Mollusca	GCF_006345805.1	548	146482	0.3727130517581446	98.0	["u11", "u12", "u4atac", "u6atac"]	ASM634580v1	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/006/345/805/GCF_006345805.1_ASM634580v1	GCF_006345805.1;PRJNA551489;SAMN11633729;VCDQ00000000.1;representative genome;2607531;2607531;Octopus sinensis;;Ov201803;latest;Chromosome;Major;Full;2019/06/17;ASM634580v1;Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences;GCA_006345805.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/006/345/805/GCF_006345805.1_ASM634580v1;;;na	1
57397	Apaloderma vittatum	Trogonidae	Trogoniformes	Chordata	GCF_000703405.1	423	113269	0.3720578404813003	55.7	["u12", "u4atac", "u6atac"]	ASM70340v1	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/703/405/GCF_000703405.1_ASM70340v1	GCF_000703405.1;PRJNA263608;SAMN02318033;JMFV00000000.1;representative genome;57397;57397;Apaloderma vittatum;;BGI_N311;latest;Scaffold;Major;Full;2014/06/16;ASM70340v1;BGI;GCA_000703405.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/703/405/GCF_000703405.1_ASM70340v1;;;na	1
45264	Acropora millepora	Acroporidae	Scleractinia	Cnidaria	GCF_013753865.1	721	193229	0.3717452951791699	97.3	["u11", "u12", "u4atac", "u6atac"]	Amil_v2.1	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/013/753/865/GCF_013753865.1_Amil_v2.1	GCF_013753865.1;PRJNA767661;SAMN14973899;JACAWQ000000000.1;representative genome;45264;45264;Acropora millepora;;JS-1;latest;Chromosome;Major;Full;2020/07/29;Amil_v2.1;Columbia;GCA_013753865.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/013/753/865/GCF_013753865.1_Amil_v2.1;;;na	1
57421	Merops nubicus	Meropidae	Coraciiformes	Chordata	GCF_000691845.1	408	109553	0.3710406416820509	56.1	["u12", "u6atac"]	ASM69184v1	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/691/845/GCF_000691845.1_ASM69184v1	GCF_000691845.1;PRJNA253837;SAMN02338310;JJRJ00000000.1;representative genome;57421;57421;Merops nubicus;;BGI_N331;latest;Scaffold;Major;Full;2014/05/16;ASM69184v1;BGI;GCA_000691845.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/691/845/GCF_000691845.1_ASM69184v1;;;na	1
57412	Colius striatus	Coliidae	Coliiformes	Chordata	GCF_000690715.1	408	109695	0.37056211002425	60.0	["u12", "u6atac"]	ASM69071v1	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/690/715/GCF_000690715.1_ASM69071v1	GCF_000690715.1;PRJNA265879;SAMN02324230;JJRP00000000.1;representative genome;57412;57412;Colius striatus;;BGI_N325;latest;Scaffold;Major;Full;2014/05/13;ASM69071v1;BGI;GCA_000690715.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/690/715/GCF_000690715.1_ASM69071v1;;;na	1
121530	Tauraco erythrolophus	Musophagidae	Musophagiformes	Chordata	GCF_000709365.1	438	117995	0.3698293549939628	62.7	["u12", "u6atac"]	ASM70936v1	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/709/365/GCF_000709365.1_ASM70936v1	GCF_000709365.1;PRJNA265115;SAMN02339893;JNOY00000000.1;representative genome;121530;121530;Tauraco erythrolophus;;BGI_N340;latest;Scaffold;Major;Full;2014/06/25;ASM70936v1;BGI;GCA_000709365.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/709/365/GCF_000709365.1_ASM70936v1;;;na	1
70779	Acropora digitifera	Acroporidae	Scleractinia	Cnidaria	GCF_000222465.1	559	150659	0.3696649869724503	75.3	["u11", "u12", "u4atac", "u6atac"]	Adig_1.1	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/222/465/GCF_000222465.1_Adig_1.1	GCF_000222465.1;PRJNA314803;SAMD00004206;BACK00000000.2;representative genome;70779;70779;Acropora digitifera;;;latest;Scaffold;Major;Full;2016/01/15;Adig_1.1;Okinawa Institute of Science and Technology;GCA_000222465.2;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/222/465/GCF_000222465.1_Adig_1.1;;;na	1
57068	Acanthisitta chloris	Acanthisittidae	Passeriformes	Chordata	GCF_000695815.1	446	120410	0.3690342225458397	60.4	["u11", "u12", "u6atac"]	ASM69581v1	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/695/815/GCF_000695815.1_ASM69581v1	GCF_000695815.1;PRJNA253841;SAMN02318032;JJRS00000000.1;representative genome;57068;57068;Acanthisitta chloris;;BGI_N310;latest;Scaffold;Major;Full;2014/05/27;ASM69581v1;BGI;GCA_000695815.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/695/815/GCF_000695815.1_ASM69581v1;;;na	1
97097	Phaethon lepturus	Phaethontidae	Pelecaniformes	Chordata	GCF_000687285.1	439	118622	0.3687185560343017	66.7	["u12", "u6atac"]	ASM68728v1	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/687/285/GCF_000687285.1_ASM68728v1	GCF_000687285.1;PRJNA265998;SAMN02339888;JJRF00000000.1;representative genome;97097;97097;Phaethon lepturus;;BGI_N335;latest;Scaffold;Major;Full;2014/05/08;ASM68728v1;BGI;GCA_000687285.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/687/285/GCF_000687285.1_ASM68728v1;;;na	1
2897299	Xenia sp. carnegie-2017	Xeniidae	Alcyonacea	Cnidaria	GCF_021976095.1	553	150473	0.3661621177810443	96.9	["u11", "u12", "u4atac", "u6atac"]	XeniaSp_v1	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/021/976/095/GCF_021976095.1_XeniaSp_v1	GCF_021976095.1;PRJNA809689;SAMN23741995;JAJSDR000000000.1;representative genome;2897299;2897299;Xenia sp. Carnegie-2017;;Carnegie-2017;latest;Scaffold;Major;Full;2022/02/04;XeniaSp_v1;Carnegie Institution of Washington;GCA_021976095.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/021/976/095/GCF_021976095.1_XeniaSp_v1;;;na	1
54380	Cariama cristata	Cariamidae	Cariamiformes	Chordata	GCF_000690535.1	435	118570	0.3655308600478971	61.6	["u12", "u6atac"]	ASM69053v1	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/690/535/GCF_000690535.1_ASM69053v1	GCF_000690535.1;PRJNA263623;SAMN02318733;JJRQ00000000.1;representative genome;54380;54380;Cariama cristata;;BGI_N322;latest;Scaffold;Major;Full;2014/05/12;ASM69053v1;BGI;GCA_000690535.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/690/535/GCF_000690535.1_ASM69053v1;;;na	1
279965	Antrostomus carolinensis	Caprimulgidae	Caprimulgiformes	Chordata	GCF_000700745.1	419	114394	0.3649412522972137	55.3	["u12", "u6atac"]	ASM70074v1	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/700/745/GCF_000700745.1_ASM70074v1	GCF_000700745.1;PRJNA265383;SAMN02318612;JMFU00000000.1;representative genome;279965;279965;Antrostomus carolinensis;;BGI_N321;latest;Scaffold;Major;Full;2014/06/10;ASM70074v1;BGI;GCA_000700745.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/700/745/GCF_000700745.1_ASM70074v1;;;na	1
175835	Buceros rhinoceros	Bucerotidae	Bucerotiformes	Chordata	GCF_000710305.1	419	115044	0.3628868122255614	61.6	["u12", "u6atac"]	ASM71030v1	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/710/305/GCF_000710305.1_ASM71030v1	GCF_000710305.1;PRJNA266010;SAMN02318191;JMFK00000000.1;representative genome;175836;175835;Buceros rhinoceros silvestris;;BGI_N320;latest;Scaffold;Major;Full;2014/06/25;ASM71030v1;BGI;GCA_000710305.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/710/305/GCF_000710305.1_ASM71030v1;;;na	1
55661	Cuculus canorus	Cuculidae	Cuculiformes	Chordata	GCF_000709325.1	526	144534	0.3626085757617537	94.1	["u11", "u4atac", "u6atac"]	ASM70932v1	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/709/325/GCF_000709325.1_ASM70932v1	GCF_000709325.1;PRJNA263299;SAMN02298149;JNOX00000000.1;representative genome;55661;55661;Cuculus canorus;;BGI_N303;latest;Scaffold;Major;Full;2014/06/17;ASM70932v1;BGI;GCA_000709325.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/709/325/GCF_000709325.1_ASM70932v1;;;na	1
94827	Tinamus guttatus	Tinamidae	Tinamiformes	Chordata	GCF_000705375.1	503	138386	0.3621597102722318	76.9	["u4atac", "u6atac"]	ASM70537v2	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/705/375/GCF_000705375.1_ASM70537v2	GCF_000705375.1;PRJNA265201;SAMN02316659;JMFW00000000.2;representative genome;94827;94827;Tinamus guttatus;;BGI_N309;latest;Scaffold;Major;Full;2014/08/05;ASM70537v2;BGI;GCA_000705375.2;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/705/375/GCF_000705375.1_ASM70537v2;;;na	1
9818	Orycteropus afer	Orycteropodidae	Tubulidentata	Chordata	GCF_000298275.1	619	170416	0.3619142280819715	97.6	["u11", "u12", "u4atac", "u6atac"]	OryAfe1.0	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/298/275/GCF_000298275.1_OryAfe1.0	GCF_000298275.1;PRJNA237355;SAMN00744890;ALYB00000000.1;representative genome;1230840;9818;Orycteropus afer afer;;SDZICR_OR568_19922;latest;Scaffold;Major;Full;2012/09/20;OryAfe1.0;Broad Institute;GCA_000298275.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/298/275/GCF_000298275.1_OryAfe1.0;;;na	1
111125	Ranitomeya imitator	Dendrobatidae	Anura	Chordata	GCA_905332335.1	789	217221	0.361910004128251	89.0	["u11", "u12", "u4atac", "u6atac"]	Ranitomeya_imitator_genomeassembly_1.0	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/332/335/GCA_905332335.1_Ranitomeya_imitator_genomeassembly_1.0	GCA_905332335.1;PRJEB28312;SAMEA7339828;CAJOBX000000000.1;representative genome;111125;111125;Ranitomeya imitator;;;latest;Scaffold;Major;Full;2021/03/21;Ranitomeya_imitator_genomeassembly_1.0;EAST CAROLINA UNIVERSITY;na;na;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/332/335/GCA_905332335.1_Ranitomeya_imitator_genomeassembly_1.0;;;na	1
7654	Lytechinus variegatus	Toxopneustidae	Temnopleuroida	Echinodermata	GCF_018143015.1	685	188916	0.3612850143195447	99.2	["u11", "u12", "u4atac", "u6atac"]	Lvar_3.0	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/018/143/015/GCF_018143015.1_Lvar_3.0	GCF_018143015.1;PRJNA729485;SAMN15823010;JAFCXN000000000.1;representative genome;7654;7654;Lytechinus variegatus;;NC3;latest;Chromosome;Major;Full;2021/04/29;Lvar_3.0;Duke University;GCA_018143015.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/018/143/015/GCF_018143015.1_Lvar_3.0;;;na	1
407821	Stegodyphus mimosarum	Eresidae	Araneae	Arthropoda	GCA_000611955.2	325	89933	0.3600788849741851	78.4	["u11", "u12", "u4atac", "u6atac"]	Stegodyphus_mimosarum_v1	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/611/955/GCA_000611955.2_Stegodyphus_mimosarum_v1	GCA_000611955.2;PRJNA222714;SAMN02720821;AZAQ00000000.1;representative genome;407821;407821;Stegodyphus mimosarum;;;latest;Scaffold;Major;Full;2014/08/01;Stegodyphus_mimosarum_v1;BGI;na;na;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/611/955/GCA_000611955.2_Stegodyphus_mimosarum_v1;;;na	1
40157	Lonchura striata	Estrildidae	Passeriformes	Chordata	GCF_005870125.1	579	160531	0.359381788839923	97.3	["u11", "u12", "u4atac", "u6atac"]	lonStrDom2	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/005/870/125/GCF_005870125.1_lonStrDom2	GCF_005870125.1;PRJNA391487;SAMN11521339;SWKX00000000.1;representative genome;299123;40157;Lonchura striata domestica;;Mets1;latest;Chromosome;Major;Full;2019/06/05;lonStrDom2;HHMI/UCSF;GCA_005870125.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/005/870/125/GCF_005870125.1_lonStrDom2;;;na	1
240206	Pterocles gutturalis	Pteroclidae	Ciconiiformes	Chordata	GCF_000699245.1	408	113344	0.3586750123074759	64.7	["u12", "u6atac"]	ASM69924v1	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/699/245/GCF_000699245.1_ASM69924v1	GCF_000699245.1;PRJNA265368;SAMN02339892;JMFR00000000.1;representative genome;240206;240206;Pterocles gutturalis;;BGI_N339;latest;Scaffold;Major;Full;2014/06/09;ASM69924v1;BGI;GCA_000699245.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/699/245/GCF_000699245.1_ASM69924v1;;;na	1
308060	Apteryx rowi	Apterygidae	Apterygiformes	Chordata	GCF_003343035.1	579	160955	0.3584384711577748	93.3	["u11", "u12", "u4atac", "u6atac"]	aptRow1	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/343/035/GCF_003343035.1_aptRow1	GCF_003343035.1;PRJNA484763;SAMN08476454;PTFB00000000.1;representative genome;308060;308060;Apteryx rowi;;R43461;latest;Scaffold;Major;Full;2018/07/26;aptRow1;Harvard University;GCA_003343035.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/343/035/GCF_003343035.1_aptRow1;;;na	1
54383	Eurypyga helias	Eurypygidae	Gruiformes	Chordata	GCF_000690775.1	395	110024	0.3577282895153914	57.3	["u11", "u12", "u4atac", "u6atac"]	ASM69077v1	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/690/775/GCF_000690775.1_ASM69077v1	GCF_000690775.1;PRJNA265393;SAMN02324546;JJRO00000000.1;representative genome;54383;54383;Eurypyga helias;;BGI_N326;latest;Scaffold;Major;Full;2014/05/13;ASM69077v1;BGI;GCA_000690775.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/690/775/GCF_000690775.1_ASM69077v1;;;na	1
143302	Condylura cristata	Talpidae	Eulipotyphla	Chordata	GCF_000260355.1	591	165023	0.3568538891639595	93.3	["u11", "u12", "u4atac", "u6atac"]	ConCri1.0	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/260/355/GCF_000260355.1_ConCri1.0	GCF_000260355.1;PRJNA193510;SAMN00727830;AJFV00000000.1;representative genome;143302;143302;Condylura cristata;;star-nosed mole 26May11;latest;Scaffold;Major;Full;2012/05/01;ConCri1.0;Broad Institute;GCA_000260355.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/260/355/GCF_000260355.1_ConCri1.0;;;na	1
291302	Miniopterus natalensis	Vespertilionidae	Chiroptera	Chordata	GCF_001595765.1	622	173932	0.3563367210147003	96.9	["u11", "u12", "u4atac", "u6atac"]	Mnat.v1	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/595/765/GCF_001595765.1_Mnat.v1	GCF_001595765.1;PRJNA317472;SAMN03652541;LDJU00000000.1;representative genome;291302;291302;Miniopterus natalensis;;MN2012-01;latest;Scaffold;Major;Full;2016/03/22;Mnat.v1;University of California, San Francisco;GCA_001595765.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/595/765/GCF_001595765.1_Mnat.v1;;;na	1
356909	Onychostruthus taczanowskii	Passeridae	Passeriformes	Chordata	GCF_017590055.1	568	158940	0.3560949921007096	98.4	["u11", "u12", "u4atac", "u6atac"]	ASM1759005v1	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/017/590/055/GCF_017590055.1_ASM1759005v1	GCF_017590055.1;PRJNA703052;SAMN18252883;JAGGNI000000000.1;representative genome;356909;356909;Onychostruthus taczanowskii;;IOZ18803;latest;Scaffold;Major;Full;2021/03/26;ASM1759005v1;Institute of Zoology, Chinese Academy of Sciences;GCA_017590055.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/017/590/055/GCF_017590055.1_ASM1759005v1;;;na	1
8673	Pseudonaja textilis	Elapidae	Squamata	Chordata	GCF_900518735.1	638	178673	0.3558063922458745	96.9	["u11", "u12", "u4atac", "u6atac"]	EBS10Xv2-PRI	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/518/735/GCF_900518735.1_EBS10Xv2-PRI	GCF_900518735.1;PRJNA495355;SAMEA4800208;ULFR00000000.1;representative genome;8673;8673;Pseudonaja textilis;;;latest;Scaffold;Major;Full;2018/09/24;EBS10Xv2-PRI;UNIVERSITY OF NEW SOUTH WALES;GCA_900518735.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/518/735/GCF_900518735.1_EBS10Xv2-PRI;;;na	1
79684	Microtus ochrogaster	Cricetidae	Rodentia	Chordata	GCF_000317375.1	645	180696	0.3556834913229771	97.6	["u11", "u12", "u4atac", "u6atac"]	MicOch1.0	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/317/375/GCF_000317375.1_MicOch1.0	GCF_000317375.1;PRJNA210839;SAMN00727831;AHZW00000000.1;representative genome;79684;79684;Microtus ochrogaster;;Prairie Vole_2;latest;Chromosome;Major;Full;2012/12/07;MicOch1.0;Broad Institute;GCA_000317375.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/317/375/GCF_000317375.1_MicOch1.0;;;na	1
48883	Geospiza fortis	Thraupidae	Passeriformes	Chordata	GCF_000277835.1	525	147101	0.3556284123392898	84.7	["u12", "u4atac", "u6atac"]	GeoFor_1.0	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/277/835/GCF_000277835.1_GeoFor_1.0	GCF_000277835.1;PRJNA217051;SAMN00839579;AKZB00000000.1;representative genome;48883;48883;Geospiza fortis;;;latest;Scaffold;Major;Full;2012/07/25;GeoFor_1.0;Beijing Genomics Institute;GCA_000277835.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/277/835/GCF_000277835.1_GeoFor_1.0;;;na	1
2489341	Strigops habroptila	Psittacidae	Psittaciformes	Chordata	GCF_004027225.2	608	170361	0.3556200246828372	99.2	["u11", "u12", "u4atac", "u6atac"]	bStrHab1.2.pri	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/027/225/GCF_004027225.2_bStrHab1.2.pri	GCF_004027225.2;PRJNA558775;SAMN09948751;RXXE00000000.2;representative genome;2489341;2489341;Strigops habroptila;;Jane;latest;Chromosome;Major;Full;2020/03/04;bStrHab1.2.pri;Vertebrate Genomes Project;GCA_004027225.2;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/027/225/GCF_004027225.2_bStrHab1.2.pri;;;na	1
8897	Chaetura pelagica	Apodidae	Apodiformes	Chordata	GCF_000747805.1	496	138981	0.3556141872853589	87.8	["u12", "u6atac"]	ChaPel_1.0	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/747/805/GCF_000747805.1_ChaPel_1.0	GCF_000747805.1;PRJNA264987;SAMN03018471;AVOS00000000.1;representative genome;8897;8897;Chaetura pelagica;;M959;latest;Scaffold;Major;Full;2014/09/04;ChaPel_1.0;BGI;GCA_000747805.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/747/805/GCF_000747805.1_ChaPel_1.0;;;na	1
118200	Dryobates pubescens	Picidae	Piciformes	Chordata	GCF_000699005.1	490	137302	0.3556084533209475	90.2	["u11", "u12", "u4atac", "u6atac"]	ASM69900v1	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/699/005/GCF_000699005.1_ASM69900v1	GCF_000699005.1;PRJNA263502;SAMN02314405;JJRU00000000.1;representative genome;118200;118200;Dryobates pubescens;;BGI_N307;latest;Scaffold;Major;Full;2014/06/06;ASM69900v1;BGI;GCA_000699005.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/699/005/GCF_000699005.1_ASM69900v1;;;na	1
1868482	Carlito syrichta	Tarsiidae	Primates	Chordata	GCF_000164805.1	621	174099	0.3554258241758242	94.5	["u11", "u12", "u4atac", "u6atac"]	Tarsius_syrichta-2.0.1	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/164/805/GCF_000164805.1_Tarsius_syrichta-2.0.1	GCF_000164805.1;PRJNA236776;SAMN02445010;ABRT00000000.2;representative genome;1868482;1868482;Carlito syrichta;;Samal-C Ts95f;latest;Scaffold;Major;Full;2013/09/18;Tarsius_syrichta-2.0.1;Washington University (WashU);GCA_000164805.2;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/164/805/GCF_000164805.1_Tarsius_syrichta-2.0.1;;;na	1
9172	Sturnus vulgaris	Sturnidae	Passeriformes	Chordata	GCF_001447265.1	554	155352	0.3553423216553564	97.6	["u11", "u12", "u4atac", "u6atac"]	Sturnus_vulgaris-1.0	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/447/265/GCF_001447265.1_Sturnus_vulgaris-1.0	GCF_001447265.1;PRJNA304638;SAMN04029017;LNCF00000000.1;representative genome;9172;9172;Sturnus vulgaris;;715;latest;Scaffold;Major;Full;2015/11/20;Sturnus_vulgaris-1.0;McDonnell Genome Institute - Washington University School of Medicine;GCA_001447265.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/447/265/GCF_001447265.1_Sturnus_vulgaris-1.0;;;na	1
30464	Nothoprocta perdicaria	Tinamidae	Tinamiformes	Chordata	GCF_003342845.1	552	154817	0.3552832289581576	92.9	["u12", "u4atac", "u6atac"]	notPer1	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/342/845/GCF_003342845.1_notPer1	GCF_003342845.1;PRJNA484763;SAMN08476459;PTEW00000000.1;representative genome;30464;30464;Nothoprocta perdicaria;;Ctin4;latest;Scaffold;Major;Full;2018/07/26;notPer1;Harvard University;GCA_003342845.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/342/845/GCF_003342845.1_notPer1;;;na	1
202533	Stegodyphus dumicola	Eresidae	Araneae	Arthropoda	GCF_010614865.1	440	123763	0.3542587538143201	81.2	["u11", "u12", "u4atac", "u6atac"]	ASM1061486v1	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/010/614/865/GCF_010614865.1_ASM1061486v1	GCF_010614865.1;PRJNA642917;SAMN13619660;JAADJH000000000.1;representative genome;202533;202533;Stegodyphus dumicola;ecotype=Namibia, Etosha;AA2019;latest;Scaffold;Major;Full;2020/02/14;ASM1061486v1;None;GCA_010614865.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/010/614/865/GCF_010614865.1_ASM1061486v1;;;na	1
52644	Haliaeetus leucocephalus	Accipitridae	Accipitriformes	Chordata	GCF_000737465.1	551	155131	0.3539265939543428	95.3	["u11", "u12", "u4atac", "u6atac"]	Haliaeetus_leucocephalus-4.0	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/737/465/GCF_000737465.1_Haliaeetus_leucocephalus-4.0	GCF_000737465.1;PRJNA269279;SAMN02664716;JPRR00000000.1;representative genome;52644;52644;Haliaeetus leucocephalus;;CR32;latest;Scaffold;Major;Full;2014/08/04;Haliaeetus_leucocephalus-4.0;The Bald Eagle Consortium;GCA_000737465.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/737/465/GCF_000737465.1_Haliaeetus_leucocephalus-4.0;;;na	1
259920	Rhincodon typus	Rhincodontidae	Orectolobiformes	Chordata	GCF_001642345.1	589	165843	0.3538982887906172	81.6	["u11", "u12", "u4atac", "u6atac"]	ASM164234v2	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/642/345/GCF_001642345.1_ASM164234v2	GCF_001642345.1;PRJNA378405;SAMN04562461;LVEK00000000.2;representative genome;259920;259920;Rhincodon typus;;Ralph;latest;Scaffold;Major;Full;2017/03/03;ASM164234v2;Emory University;GCA_001642345.2;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/642/345/GCF_001642345.1_ASM164234v2;;;na	1
29088	Neomonachus schauinslandi	Phocidae	Carnivora	Chordata	GCF_002201575.2	631	177741	0.3537550736662704	98.4	["u11", "u12", "u4atac", "u6atac"]	ASM220157v2	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/201/575/GCF_002201575.2_ASM220157v2	GCF_002201575.2;PRJNA392091;SAMN06841387;NINY00000000.2;representative genome;29088;29088;Neomonachus schauinslandi;;;latest;Chromosome;Major;Full;2021/10/20;ASM220157v2;Johns Hopkins University;GCA_002201575.2;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/201/575/GCF_002201575.2_ASM220157v2;;;na	1
13146	Melopsittacus undulatus	Psittaculidae	Psittaciformes	Chordata	GCF_012275295.1	599	168872	0.3534528031344596	99.6	["u11", "u12", "u4atac", "u6atac"]	bMelUnd1.mat.Z	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/012/275/295/GCF_012275295.1_bMelUnd1.mat.Z	GCF_012275295.1;PRJNA629576;SAMN12623090;JAAVWG000000000.1;representative genome;13146;13146;Melopsittacus undulatus;;bMelUnd1;latest;Chromosome;Major;Full;2020/04/13;bMelUnd1.mat.Z;G10K;GCA_012275295.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/012/275/295/GCF_012275295.1_bMelUnd1.mat.Z;;;na	1
221976	Pyrgilauda ruficollis	Passeridae	Passeriformes	Chordata	GCF_017590135.1	563	158977	0.3528895574777485	96.5	["u11", "u12", "u4atac", "u6atac"]	ASM1759013v1	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/017/590/135/GCF_017590135.1_ASM1759013v1	GCF_017590135.1;PRJNA703052;SAMN18252884;JAGGNJ000000000.1;representative genome;221976;221976;Pyrgilauda ruficollis;;IOZ18807;latest;Scaffold;Major;Full;2021/03/26;ASM1759013v1;Institute of Zoology, Chinese Academy of Sciences;GCA_017590135.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/017/590/135/GCF_017590135.1_ASM1759013v1;;;na	1
9925	Capra hircus	Bovidae	Artiodactyla	Chordata	GCF_001704415.1	674	190325	0.3528814286985796	98.8	["u11", "u12", "u4atac", "u6atac"]	ARS1	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/704/415/GCF_001704415.1_ARS1	GCF_001704415.1;PRJNA340281;SAMN03863711;LWLT00000000.1;representative genome;9925;9925;Capra hircus;breed=San Clemente;;latest;Chromosome;Major;Full;2016/08/24;ARS1;USDA ARS;GCA_001704415.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/704/415/GCF_001704415.1_ARS1;;;na	1
87175	Camarhynchus parvulus	Thraupidae	Passeriformes	Chordata	GCF_901933205.1	574	162114	0.3528225806451612	99.6	["u11", "u12", "u4atac", "u6atac"]	STF_HiC	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/901/933/205/GCF_901933205.1_STF_HiC	GCF_901933205.1;PRJNA566393;SAMEA5603054;CABFNF000000000.1;representative genome;87175;87175;Camarhynchus parvulus;;;latest;Chromosome;Major;Full;2019/09/06;STF_HiC;UPPSALA UNIVERISTY;GCA_901933205.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/901/933/205/GCF_901933205.1_STF_HiC;;;na	1
84834	Molothrus ater	Icteridae	Passeriformes	Chordata	GCF_012460135.1	583	164681	0.3527689030883919	100.0	["u11", "u12", "u4atac", "u6atac"]	BPBGC_Mater_1.0	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/012/460/135/GCF_012460135.1_BPBGC_Mater_1.0	GCF_012460135.1;PRJNA665515;SAMN14074414;JAAQZI000000000.1;representative genome;84834;84834;Molothrus ater;breed=brown headed cowbird;BHLD 08-10-18;latest;Chromosome;Major;Full;2020/04/20;BPBGC_Mater_1.0;Brood Parasitic Bird Genomes Consortium;GCA_012460135.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/012/460/135/GCF_012460135.1_BPBGC_Mater_1.0;;;na	1
8969	Haliaeetus albicilla	Accipitridae	Accipitriformes	Chordata	GCF_000691405.1	427	120618	0.352761369738527	67.1	["u11", "u6atac"]	ASM69140v1	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/691/405/GCF_000691405.1_ASM69140v1	GCF_000691405.1;PRJNA263514;SAMN02333670;JJRL00000000.1;representative genome;8969;8969;Haliaeetus albicilla;;BGI_N329;latest;Scaffold;Major;Full;2014/05/15;ASM69140v1;BGI;GCA_000691405.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/691/405/GCF_000691405.1_ASM69140v1;;;na	1
35005	Thamnophis elegans	Colubridae	Squamata	Chordata	GCF_009769535.1	630	177990	0.3527040644944575	98.0	["u11", "u12", "u4atac", "u6atac"]	rThaEle1.pri	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/769/535/GCF_009769535.1_rThaEle1.pri	GCF_009769535.1;PRJNA602516;SAMN12629499;WNNA00000000.1;representative genome;35005;35005;Thamnophis elegans;;rThaEle1;latest;Chromosome;Major;Full;2019/12/23;rThaEle1.pri;Vertebrate Genomes Project;GCA_009769535.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/769/535/GCF_009769535.1_rThaEle1.pri;;;na	1
28377	Anolis carolinensis	Dactyloidae	Squamata	Chordata	GCF_000090745.1	610	172461	0.3524565062893263	87.8	["u11", "u12", "u4atac", "u6atac"]	AnoCar2.0	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/090/745/GCF_000090745.1_AnoCar2.0	GCF_000090745.1;PRJNA60547;SAMN02981230;AAWZ00000000.2;representative genome;28377;28377;Anolis carolinensis;;;latest;Chromosome;Major;Full;2011/01/10;AnoCar2.0;Broad Institute;GCA_000090745.2;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/090/745/GCF_000090745.1_AnoCar2.0;;;na	1
8663	Notechis scutatus	Elapidae	Squamata	Chordata	GCF_900518725.1	607	171967	0.3517331695388645	95.3	["u12", "u4atac", "u6atac"]	TS10Xv2-PRI	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/518/725/GCF_900518725.1_TS10Xv2-PRI	GCF_900518725.1;PRJNA494227;SAMEA4800209;ULFQ00000000.1;representative genome;8663;8663;Notechis scutatus;;;latest;Scaffold;Major;Full;2018/09/24;TS10Xv2-PRI;UNIVERSITY OF NEW SOUTH WALES;GCA_900518725.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/518/725/GCF_900518725.1_TS10Xv2-PRI;;;na	1
158814	Terrapene carolina	Emydidae	Testudines	Chordata	GCF_002925995.2	683	193499	0.351731880400861	98.0	["u11", "u12", "u4atac", "u6atac"]	T_m_triunguis-2.0	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/925/995/GCF_002925995.2_T_m_triunguis-2.0	GCF_002925995.2;PRJNA435426;SAMN08285364;PRFB00000000.2;representative genome;2587831;158814;Terrapene carolina triunguis;;2854851;latest;Scaffold;Major;Full;2018/09/21;T_m_triunguis-2.0;McDonnell Genome Institute - Washington University School of Medicine;GCA_002925995.2;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/925/995/GCF_002925995.2_T_m_triunguis-2.0;;;na	1
50402	Charadrius vociferus	Charadriidae	Charadriiformes	Chordata	GCF_000708025.1	503	142517	0.3516990630681024	88.2	["u11", "u12", "u6atac"]	ASM70802v2	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/708/025/GCF_000708025.1_ASM70802v2	GCF_000708025.1;PRJNA263452;SAMN02296710;JMFX00000000.2;representative genome;50402;50402;Charadrius vociferus;;BGI_N301;latest;Scaffold;Major;Full;2014/08/05;ASM70802v2;BGI;GCA_000708025.2;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/708/025/GCF_000708025.1_ASM70802v2;;;na	1
181119	Pseudopodoces humilis	Paridae	Passeriformes	Chordata	GCF_000331425.1	568	161095	0.3513481749070597	99.2	["u11", "u12", "u4atac", "u6atac"]	PseHum1.0	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/331/425/GCF_000331425.1_PseHum1.0	GCF_000331425.1;PRJNA217046;SAMN02981490;ANZD00000000.1;representative genome;181119;181119;Pseudopodoces humilis;;;latest;Scaffold;Major;Full;2013/01/11;PseHum1.0;Beijing Genomics Institute (BGI)-Shenzhen;GCA_000331425.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/331/425/GCF_000331425.1_PseHum1.0;;;na	1
61221	Varanus komodoensis	Varanidae	Squamata	Chordata	GCF_004798865.1	626	177618	0.3512039675949821	98.0	["u11", "u12", "u4atac", "u6atac"]	ASM479886v1	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/798/865/GCF_004798865.1_ASM479886v1	GCF_004798865.1;PRJNA771140;SAMN10967258;SJPD00000000.1;representative genome;61221;61221;Varanus komodoensis;strain=SLA01;;latest;Scaffold;Major;Full;2019/04/17;ASM479886v1;Gladstone Institutes;GCA_004798865.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/798/865/GCF_004798865.1_ASM479886v1;;;na	1
103944	Protobothrops mucrosquamatus	Viperidae	Squamata	Chordata	GCF_001527695.2	604	171534	0.3508812696789785	96.5	["u11", "u12", "u4atac", "u6atac"]	P.Mucros_1.0	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/527/695/GCF_001527695.2_P.Mucros_1.0	GCF_001527695.2;PRJNA313429;SAMD00043515;BCNE00000000.2;representative genome;103944;103944;Protobothrops mucrosquamatus;;PMUCROS;latest;Scaffold;Minor;Full;2016/01/22;P.Mucros_1.0;Okinawa Institute of Science and Technology;GCA_001527695.3;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/527/695/GCF_001527695.2_P.Mucros_1.0;;;na	1
219594	Aythya fuligula	Anatidae	Anseriformes	Chordata	GCF_009819795.1	566	160783	0.350792381731526	98.8	["u11", "u12", "u4atac", "u6atac"]	bAytFul2.pri	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/819/795/GCF_009819795.1_bAytFul2.pri	GCF_009819795.1;PRJNA602521;SAMN12621346;WNMM00000000.1;representative genome;219594;219594;Aythya fuligula;;bAytFul2;latest;Chromosome;Major;Full;2019/12/31;bAytFul2.pri;Vertebrate Genomes Project;GCA_009819795.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/819/795/GCF_009819795.1_bAytFul2.pri;;;na	1
43150	Hirundo rustica	Hirundinidae	Passeriformes	Chordata	GCF_015227805.1	577	163915	0.3507769374802422	96.5	["u11", "u12", "u4atac", "u6atac"]	bHirRus1.pri.v2	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/015/227/805/GCF_015227805.1_bHirRus1.pri.v2	GCF_015227805.1;PRJNA713843;SAMN14675488;JADDRP000000000.2;representative genome;43150;43150;Hirundo rustica;;bHirRus1;latest;Chromosome;Major;Full;2021/03/02;bHirRus1.pri.v2;Vertebrate Genomes Project;GCA_015227805.2;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/015/227/805/GCF_015227805.1_bHirRus1.pri.v2;;;na	1
164674	Empidonax traillii	Tyrannidae	Passeriformes	Chordata	GCF_003031625.1	569	161724	0.3506004571977842	96.5	["u11", "u12", "u4atac", "u6atac"]	ASM303162v1	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/031/625/GCF_003031625.1_ASM303162v1	GCF_003031625.1;PRJNA516471;SAMN08663748;PWAB00000000.1;representative genome;164674;164674;Empidonax traillii;ecotype=Southwest subspecies;1590-97213;latest;Scaffold;Major;Full;2018/04/03;ASM303162v1;UCLA;GCA_003031625.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/031/625/GCF_003031625.1_ASM303162v1;;;na	1
10047	Meriones unguiculatus	Muridae	Rodentia	Chordata	GCF_002204375.1	656	186791	0.3499655902735173	96.1	["u11", "u12", "u4atac", "u6atac"]	MunDraft-v1.0	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/204/375/GCF_002204375.1_MunDraft-v1.0	GCF_002204375.1;PRJNA391923;SAMN06897401;NHTI00000000.1;representative genome;10047;10047;Meriones unguiculatus;strain=243;;latest;Scaffold;Major;Full;2017/06/21;MunDraft-v1.0;Lucigen Corp.;GCA_002204375.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/204/375/GCF_002204375.1_MunDraft-v1.0;;;na	1
9999	Urocitellus parryii	Sciuridae	Rodentia	Chordata	GCF_003426925.1	619	176328	0.3498222631635461	97.3	["u11", "u12", "u4atac", "u6atac"]	ASM342692v1	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/426/925/GCF_003426925.1_ASM342692v1	GCF_003426925.1;PRJNA489874;SAMN09469529;QVIC00000000.1;representative genome;9999;9999;Urocitellus parryii;ecotype=Arctic tundra;AGS 11-09-20;latest;Scaffold;Major;Full;2018/08/24;ASM342692v1;UAF;GCA_003426925.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/426/925/GCF_003426925.1_ASM342692v1;;;na	1
176946	Python bivittatus	Pythonidae	Squamata	Chordata	GCF_000186305.1	604	172190	0.3495491741611398	90.2	["u11", "u12", "u4atac", "u6atac"]	Python_molurus_bivittatus-5.0.2	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/186/305/GCF_000186305.1_Python_molurus_bivittatus-5.0.2	GCF_000186305.1;PRJNA238085;SAMN02981298;AEQU00000000.2;representative genome;176946;176946;Python bivittatus;;;latest;Scaffold;Major;Full;2013/09/15;Python_molurus_bivittatus-5.0.2;The Consortium for Comparative Genomics, UC Denver;GCA_000186305.2;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/186/305/GCF_000186305.1_Python_molurus_bivittatus-5.0.2;;;na	1
8790	Dromaius novaehollandiae	Dromaiidae	Casuariiformes	Chordata	GCF_003342905.1	565	161258	0.349146907423543	97.3	["u11", "u12", "u4atac", "u6atac"]	droNov1	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/342/905/GCF_003342905.1_droNov1	GCF_003342905.1;PRJNA484763;SAMN08476457;PTEY00000000.1;representative genome;8790;8790;Dromaius novaehollandiae;;6597;latest;Scaffold;Major;Full;2018/07/26;droNov1;Harvard University;GCA_003342905.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/342/905/GCF_003342905.1_droNov1;;;na	1
9778	Trichechus manatus	Trichechidae	Sirenia	Chordata	GCF_000243295.1	617	176114	0.3491181513147099	98.4	["u11", "u12", "u4atac", "u6atac"]	TriManLat1.0	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/243/295/GCF_000243295.1_TriManLat1.0	GCF_000243295.1;PRJNA189960;SAMN00632092;AHIN00000000.1;representative genome;127582;9778;Trichechus manatus latirostris;;Lorelei;latest;Scaffold;Major;Full;2012/01/23;TriManLat1.0;Broad Institute;GCA_000243295.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/243/295/GCF_000243295.1_TriManLat1.0;;;na	1
188344	Leptosomus discolor	Leptosomidae	Coraciiformes	Chordata	GCF_000691785.1	418	119316	0.3491071875991782	61.2	["u11", "u12", "u6atac"]	ASM69178v1	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/691/785/GCF_000691785.1_ASM69178v1	GCF_000691785.1;PRJNA263616;SAMN02333687;JJRK00000000.1;representative genome;188344;188344;Leptosomus discolor;;BGI_N330;latest;Scaffold;Major;Full;2014/05/23;ASM69178v1;BGI;GCA_000691785.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/691/785/GCF_000691785.1_ASM69178v1;;;na	1
9715	Mirounga leonina	Phocidae	Carnivora	Chordata	GCF_011800145.1	662	188996	0.349049341446182	98.8	["u11", "u12", "u4atac", "u6atac"]	KU_Mleo_1.0	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/011/800/145/GCF_011800145.1_KU_Mleo_1.0	GCF_011800145.1;PRJNA638103;SAMN13282320;JAAMPH000000000.1;representative genome;9715;9715;Mirounga leonina;;KUSES-001;latest;Scaffold;Major;Full;2020/03/31;KU_Mleo_1.0;Earth Biogenome Project;GCA_011800145.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/011/800/145/GCF_011800145.1_KU_Mleo_1.0;;;na	1
9054	Phasianus colchicus	Phasianidae	Galliformes	Chordata	GCF_004143745.1	567	161975	0.3488329170306751	98.0	["u11", "u12", "u4atac", "u6atac"]	ASM414374v1	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/143/745/GCF_004143745.1_ASM414374v1	GCF_004143745.1;PRJNA589599;SAMN08888240;QCWP00000000.1;representative genome;9054;9054;Phasianus colchicus;;SZU-A5-319;latest;Scaffold;Major;Full;2019/02/06;ASM414374v1;Shenzhen University;GCA_004143745.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/143/745/GCF_004143745.1_ASM414374v1;;;na	1
9244	Calypte anna	Trochilidae	Apodiformes	Chordata	GCF_003957555.1	537	153405	0.3488326772420781	94.9	["u12", "u4atac", "u6atac"]	bCalAnn1_v1.p	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/957/555/GCF_003957555.1_bCalAnn1_v1.p	GCF_003957555.1;PRJNA558503;SAMN02265252;RRCD00000000.1;representative genome;9244;9244;Calypte anna;;BGI_N300;latest;Chromosome;Major;Full;2019/05/16;bCalAnn1_v1.p;Vertebrate Genomes Project;GCA_003957555.2;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/957/555/GCF_003957555.1_bCalAnn1_v1.p;;;na	1
260995	Geotrypetes seraphini	Dermophiidae	Gymnophiona	Chordata	GCF_902459505.1	657	187723	0.3487631383374031	99.2	["u11", "u12", "u4atac", "u6atac"]	aGeoSer1.1	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/902/459/505/GCF_902459505.1_aGeoSer1.1	GCF_902459505.1;PRJNA627137;SAMEA104387963;CABPRQ000000000.1;representative genome;260995;260995;Geotrypetes seraphini;;;latest;Chromosome;Major;Full;2019/08/18;aGeoSer1.1;SC;GCA_902459505.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/902/459/505/GCF_902459505.1_aGeoSer1.1;;;na	1
8475	Chelydra serpentina	Chelydridae	Testudines	Chordata	GCA_018859375.1	546	156074	0.348614480909207	91.4	["u11", "u12", "u4atac", "u6atac"]	ASM1885937v1	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/859/375/GCA_018859375.1_ASM1885937v1	GCA_018859375.1;PRJNA574487;SAMN13981802;JAHGAV000000000.1;representative genome;8475;8475;Chelydra serpentina;;KW;latest;Scaffold;Major;Full;2021/06/11;ASM1885937v1;University of North Dakota;na;na;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/859/375/GCA_018859375.1_ASM1885937v1;;;na	1
30611	Otolemur garnettii	Galagidae	Primates	Chordata	GCF_000181295.1	617	176440	0.3484753497461269	97.3	["u11", "u12", "u4atac", "u6atac"]	OtoGar3	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/181/295/GCF_000181295.1_OtoGar3	GCF_000181295.1;PRJNA169348;SAMN02981229;AAQR00000000.3;representative genome;30611;30611;Otolemur garnettii;;467f Iridium;latest;Scaffold;Major;Full;2011/03/16;OtoGar3;Broad Institute of MIT and Harvard, USA, Cambridge;GCA_000181295.3;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/181/295/GCF_000181295.1_OtoGar3;;;na	1
40151	Monodon monoceros	Monodontidae	Artiodactyla	Chordata	GCF_005190385.1	624	178652	0.348066668154131	99.6	["u11", "u12", "u4atac", "u6atac"]	NGI_Narwhal_1	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/005/190/385/GCF_005190385.1_NGI_Narwhal_1	GCF_005190385.1;PRJNA542700;SAMN10872456;SIHG00000000.1;representative genome;40151;40151;Monodon monoceros;ecotype=Baffin Bay Population;NGI;latest;Scaffold;Major;Full;2019/05/06;NGI_Narwhal_1;The Narwhal Genome Initiative;GCA_005190385.2;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/005/190/385/GCF_005190385.1_NGI_Narwhal_1;;;na	1
185453	Chrysochloris asiatica	Chrysochloridae		Chordata	GCF_000296735.1	623	178592	0.3476271517451106	98.0	["u11", "u12", "u4atac", "u6atac"]	ChrAsi1.0	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/296/735/GCF_000296735.1_ChrAsi1.0	GCF_000296735.1;PRJNA232768;SAMN00744889;AMDV00000000.1;representative genome;185453;185453;Chrysochloris asiatica;;;latest;Scaffold;Major;Full;2012/09/19;ChrAsi1.0;Broad Institute;GCA_000296735.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/296/735/GCF_000296735.1_ChrAsi1.0;;;na	1
118797	Lipotes vexillifer	Lipotidae	Artiodactyla	Chordata	GCF_000442215.1	606	173778	0.3475089457748417	98.0	["u11", "u12", "u4atac", "u6atac"]	Lipotes_vexillifer_v1	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/442/215/GCF_000442215.1_Lipotes_vexillifer_v1	GCF_000442215.1;PRJNA232751;SAMN02953859;AUPI00000000.1;representative genome;118797;118797;Lipotes vexillifer;;;latest;Scaffold;Major;Full;2013/07/31;Lipotes_vexillifer_v1;BGI;GCA_000442215.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/442/215/GCF_000442215.1_Lipotes_vexillifer_v1;;;na	1
91951	Catharus ustulatus	Turdidae	Passeriformes	Chordata	GCF_009819885.2	608	174426	0.3473610841322257	100.0	["u11", "u12", "u4atac", "u6atac"]	bCatUst1.pri.v2	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/819/885/GCF_009819885.2_bCatUst1.pri.v2	GCF_009819885.2;PRJNA613294;SAMN12618602;WNMQ00000000.2;representative genome;91951;91951;Catharus ustulatus;;bCatUst1;latest;Chromosome;Major;Full;2020/12/22;bCatUst1.pri.v2;Vertebrate Genomes Project;GCA_009819885.2;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/819/885/GCF_009819885.2_bCatUst1.pri.v2;;;na	1
30331	Bufo gargarizans	Bufonidae	Anura	Chordata	GCF_014858855.1	699	200536	0.3473550823663875	94.9	["u11", "u12", "u4atac", "u6atac"]	ASM1485885v1	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/858/855/GCF_014858855.1_ASM1485885v1	GCF_014858855.1;PRJNA769289;SAMN14734018;JABFFT000000000.1;representative genome;30331;30331;Bufo gargarizans;;SCDJY-AF-19;latest;Chromosome;Major;Full;2020/10/21;ASM1485885v1;Chengdu Institute of Biology, CAS;GCA_014858855.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/858/855/GCF_014858855.1_ASM1485885v1;;;na	1
7868	Callorhinchus milii	Callorhinchidae	Chimaeriformes	Chordata	GCF_018977255.1	606	173861	0.3473436237225377	92.5	["u11", "u12", "u4atac", "u6atac"]	IMCB_Cmil_1.0	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/018/977/255/GCF_018977255.1_IMCB_Cmil_1.0	GCF_018977255.1;PRJNA744271;SAMN12905446;WEZY00000000.1;representative genome;7868;7868;Callorhinchus milii;;IMCB2004;latest;Scaffold;Major;Full;2021/06/21;IMCB_Cmil_1.0;Institute of Molecular and Cell Biology, A*star, Singapore;GCA_018977255.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/018/977/255/GCF_018977255.1_IMCB_Cmil_1.0;;;na	1
9707	Odobenus rosmarus	Odobenidae	Carnivora	Chordata	GCF_000321225.1	620	177897	0.3473058588257701	98.8	["u11", "u12", "u4atac", "u6atac"]	Oros_1.0	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/321/225/GCF_000321225.1_Oros_1.0	GCF_000321225.1;PRJNA189954;SAMN01180787;ANOP00000000.1;representative genome;9708;9707;Odobenus rosmarus divergens;;Ivan;latest;Scaffold;Major;Full;2013/01/16;Oros_1.0;Marine mammals;GCA_000321225.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/321/225/GCF_000321225.1_Oros_1.0;;;na	1
13397	Carcharodon carcharias	Alopiidae	Lamniformes	Chordata	GCF_017639515.1	663	190347	0.3471022459557091	98.8	["u11", "u12", "u4atac", "u6atac"]	sCarCar2.pri	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/017/639/515/GCF_017639515.1_sCarCar2.pri	GCF_017639515.1;PRJNA725502;SAMN12629504;JAGDEE000000000.1;representative genome;13397;13397;Carcharodon carcharias;;sCarCar2;latest;Chromosome;Major;Full;2021/03/30;sCarCar2.pri;Vertebrate Genomes Project;GCA_017639515.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/017/639/515/GCF_017639515.1_sCarCar2.pri;;;na	1
189058	Neophocaena asiaeorientalis	Phocoenidae	Artiodactyla	Chordata	GCF_003031525.2	618	177478	0.3470038630850777	98.4	["u11", "u12", "u4atac", "u6atac"]	Neophocaena_asiaeorientalis_V1	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/031/525/GCF_003031525.2_Neophocaena_asiaeorientalis_V1	GCF_003031525.2;PRJNA449518;SAMN05831577;MKKW00000000.1;representative genome;1706337;189058;Neophocaena asiaeorientalis asiaeorientalis;breed=wild;;latest;Scaffold;Minor;Full;2018/04/03;Neophocaena_asiaeorientalis_V1;Nanjing normal university;GCA_003031525.2;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/031/525/GCF_003031525.2_Neophocaena_asiaeorientalis_V1;;;na	1
9417	Artibeus jamaicensis	Phyllostomidae	Chiroptera	Chordata	GCF_014825515.1	640	183874	0.3468571490510205	98.0	["u11", "u12", "u4atac", "u6atac"]	WHU_Ajam_v2	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/825/515/GCF_014825515.1_WHU_Ajam_v2	GCF_014825515.1;PRJNA673233;SAMN12273914;VSFN00000000.1;representative genome;9417;9417;Artibeus jamaicensis;;1a;latest;Scaffold;Major;Full;2020/09/30;WHU_Ajam_v2;College of Life Sciences at Wuhan University;GCA_014825515.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/825/515/GCF_014825515.1_WHU_Ajam_v2;;;na	1
9627	Vulpes vulpes	Canidae	Carnivora	Chordata	GCF_003160815.1	637	183035	0.3468138856221961	99.2	["u11", "u12", "u4atac", "u6atac"]	VulVul2.2	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/160/815/GCF_003160815.1_VulVul2.2	GCF_003160815.1;PRJNA482864;SAMN06553695;NBDQ00000000.1;representative genome;9627;9627;Vulpes vulpes;strain=TameXAggressive cross;;latest;Scaffold;Major;Full;2018/05/25;VulVul2.2;University of Illinois at Urbana-Champaign;GCA_003160815.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/160/815/GCF_003160815.1_VulVul2.2;;;na	1
328815	Manacus vitellinus	Pipridae	Passeriformes	Chordata	GCF_001715985.3	519	149246	0.3465429172370046	87.5	["u12", "u4atac", "u6atac"]	ASM171598v3	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/715/985/GCF_001715985.3_ASM171598v3	GCF_001715985.3;PRJNA341382;SAMN02299332;MCBO00000000.3;representative genome;328815;328815;Manacus vitellinus;;BGI_N305;latest;Scaffold;Major;Full;2019/07/03;ASM171598v3;Smithsonian Institution National Museum of Natural History;GCA_001715985.3;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/715/985/GCF_001715985.3_ASM171598v3;;;na	1
44394	Zonotrichia albicollis	Passerellidae	Passeriformes	Chordata	GCF_000385455.1	502	144378	0.3464936499171728	75.7	["u11", "u12", "u6atac"]	Zonotrichia_albicollis-1.0.1	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/385/455/GCF_000385455.1_Zonotrichia_albicollis-1.0.1	GCF_000385455.1;PRJNA217032;SAMN02981528;ARWJ00000000.1;representative genome;44394;44394;Zonotrichia albicollis;;Tan morph;latest;Scaffold;Major;Full;2013/04/30;Zonotrichia_albicollis-1.0.1;White-throated sparrow consortium;GCA_000385455.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/385/455/GCF_000385455.1_Zonotrichia_albicollis-1.0.1;;;na	1

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CREATE TABLE "genomes" (
"taxonomy_id" INTEGER,
  "species" TEXT,
  "family" TEXT,
  "order" TEXT,
  "phylum" TEXT,
  "accession" TEXT,
  "n_minor_introns" INTEGER,
  "n_major_introns" INTEGER,
  "percent_minor_introns" REAL,
  "busco_score" REAL,
  "minor_snRNAs" TEXT,
  "genome_version" TEXT,
  "source_url" TEXT,
  "source_metadata" TEXT,
  "minor_intron+" INTEGER
  ,PRIMARY KEY ([taxonomy_id])
);
CREATE INDEX [idx_genomes_phylum]
    ON [genomes] ([phylum]);
CREATE INDEX [idx_genomes_order]
    ON [genomes] ([order]);
CREATE INDEX [idx_genomes_family]
    ON [genomes] ([family]);